Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1893 ATGAACACGGCAACAATTCACAAAATTCGTGGAATCACAAAAACTTTCAACCCATCAAATTGCAACAACAGTACTACTAACAAAGGATCATTAACAAGAGCTCTTGTTCTGTACAAGCAAACTCGTCACGAAGCAACACACGACCCCACCGTGATCCCTCAGTTACTCAAAGCATGCGATTCTCATCCCTTCCTTCATTACGTTAAATCCTTGCATGCAGAGACCATAAAAGCCGGTTCGGACATCAACGTCTTCATTGGAACGGCAATTATTACTGCTTATTCCAAATGCGGTGTTGTTTTGGATGCACGCAAGCTGTTCGATGTTATGCCTGAGAGAAATGTTGTGACTTGGAATGCAATGATTGGTGGGTACTTCAGAAATGGTGATACTGAATCTGCTTCATTAGCGTTTGAGGAAATGCCGGGGAAATCAAGGGTGAGTTGGAGGCAGATGATTGGTGGGTTTGCGAAAAATGGTGATACTGTAACGGCTAGGAGATTGTTTGATAAGGTTCCGAATGAGTTTAAGGATGTGGTGACGTGGAGTGTAATGGTTGATGGGTATGCTAAGAAAGGAGAGATGGAGGATGCAAGAGAGGTGTTTGAGTTAATGCCTGAAAGGAATTGTTTTGCTTGGTCATCTATGGTTTGTGGGTATTGCAAGGAGGGTAGTATTGTGGAGGCTGAGGCTATTTTTCGAAGGATTTTGGTCCGGAATTTGGAGATTTGGAATTCCATGATTGCTGGATATGTACAGAATGGGTTTGGTGAGAAAGCATTGGAGGCTTTTGGGGAAATGAGAGTTGAAGGGTTTGAGCCAGATGAGTTTACTGTTGTTAGTGTTTTATCTGCTTGTGCTCAGCTTGGGGACTTGGATGCTGGCAAACAAATCCATCGCATGATAGAACGGAAAGGAATAGCTGTGAACCAGTTTGTTTTGAGTGGATTAGTTGACATGTATGCGAAATGTGGGGACTTGGTTCATGCAAAGGTGGTGTTTGAAAGTTACAATGACAGGAATGCTGTCTGCTGGAATGCTATGATTTCGGGTTTTGCGGTGAATGGAAAATGCAAGGAGGTTCTTGAGTATCTGTGCAAGATGGAGGAGTCAAATATAAGGCCTGATGCTGTCACATTTACCAGTGTACTCTCAGCTTGTGCTCATGGAGGTTTGGTTAGTGAAGCGTTGGAAGTAATATCGAAAATGGAGGCATGTGGAATTGAAATAAACATCTGGCACTATGGATGCATGGTTGACCTCTTGGGTAGAGCAGGGCGGTTAAAGGAGGCATATGAGTTAATAAAAAGAATGCCTTTGAAGCCTAATAAAAACATTTTGGGGGCAATGATTAGTGCTTGTTGGATTCATTCAGATATGAAAATGGCAGAACAAACTATTAAGATGATTGGTACAGACTCTCCTACGTGTGCTAATTCTCACAACGTGCTTTTGTCGAATATTTATGCAGGTTCAGAAAAATGGGAAAAATCTGAAATAATAAGGGCGAACATGACTGATAAAGGGTCTGAAAAGATACCAGGGTGTAGTTCAATCATCATTAGCAACTCTGTCGTTGATCAGAGTTGGCTCAACCTGAGGGCAAGGAGCTGTGTTCTGGTGGGTAAAAACTGTGCTATGAGGAAGCCACATATGAAGTGTTGA 1665 0.424 MNTATIHKIRGITKTFNPSNCNNSTTNKGSLTRALVLYKQTRHEATHDPTVIPQLLKACDSHPFLHYVKSLHAETIKAGSDINVFIGTAIITAYSKCGVVLDARKLFDVMPERNVVTWNAMIGGYFRNGDTESASLAFEEMPGKSRVSWRQMIGGFAKNGDTVTARRLFDKVPNEFKDVVTWSVMVDGYAKKGEMEDAREVFELMPERNCFAWSSMVCGYCKEGSIVEAEAIFRRILVRNLEIWNSMIAGYVQNGFGEKALEAFGEMRVEGFEPDEFTVVSVLSACAQLGDLDAGKQIHRMIERKGIAVNQFVLSGLVDMYAKCGDLVHAKVVFESYNDRNAVCWNAMISGFAVNGKCKEVLEYLCKMEESNIRPDAVTFTSVLSACAHGGLVSEALEVISKMEACGIEINIWHYGCMVDLLGRAGRLKEAYELIKRMPLKPNKNILGAMISACWIHSDMKMAEQTIKMIGTDSPTCANSHNVLLSNIYAGSEKWEKSEIIRANMTDKGSEKIPGCSSIIISNSVVDQSWLNLRARSCVLVGKNCAMRKPHMKC* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1893 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Psa5g1893 554 Pfam E motif 479 519 IPR046848 -
Psa5g1893 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Psa5g1893 554 SUPERFAMILY TPR-like 16 235 IPR011990 GO:0005515
Psa5g1893 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Psa5g1893 554 Pfam PPR repeat 414 439 IPR002885 -
Psa5g1893 554 Pfam PPR repeat 116 143 IPR002885 -
Psa5g1893 554 Pfam PPR repeat 212 240 IPR002885 -
Psa5g1893 554 Pfam PPR repeat 180 210 IPR002885 -
Psa5g1893 554 Pfam PPR repeat 147 171 IPR002885 -
Psa5g1893 554 Pfam PPR repeat 88 115 IPR002885 -
Psa5g1893 554 Pfam PPR repeat family 241 287 IPR002885 -
Psa5g1893 554 Pfam PPR repeat family 341 388 IPR002885 -
Psa5g1893 554 Gene3D Tetratricopeptide repeat domain 142 209 IPR011990 GO:0005515
Psa5g1893 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 178 212 IPR002885 -
Psa5g1893 554 TIGRFAM PPR: pentatricopeptide repeat domain 378 411 IPR002885 -
Psa5g1893 554 TIGRFAM PPR: pentatricopeptide repeat domain 180 210 IPR002885 -
Psa5g1893 554 TIGRFAM PPR: pentatricopeptide repeat domain 116 141 IPR002885 -
Psa5g1893 554 TIGRFAM PPR: pentatricopeptide repeat domain 343 377 IPR002885 -
Psa5g1893 554 TIGRFAM PPR: pentatricopeptide repeat domain 415 438 IPR002885 -
Psa5g1893 554 TIGRFAM PPR: pentatricopeptide repeat domain 212 241 IPR002885 -
Psa5g1893 554 TIGRFAM PPR: pentatricopeptide repeat domain 243 276 IPR002885 -
Psa5g1893 554 PANTHER OS01G0913400 PROTEIN-RELATED 21 519 - -
Psa5g1893 554 PANTHER BNACNNG13520D PROTEIN 21 519 - -
Psa5g1893 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Psa5g1893 554 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Psa5g1893 554 Gene3D Tetratricopeptide repeat domain 210 315 IPR011990 GO:0005515
Psa5g1893 554 Gene3D Tetratricopeptide repeat domain 316 550 IPR011990 GO:0005515
Psa5g1893 554 Gene3D Tetratricopeptide repeat domain 23 141 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1893 Psa-Chr5 146237153 146239091 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1893 48 525 Glycoside Hydrolase AT3G49170 30.754 2.53e-63 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1893 - - mtr:MTR_3g089880 874.389