Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa5g1891 | ATGAGTCACAGAGGAATGGACCGCGACGACGAAGACGACGAGGATTACGAAGAGCAGGGGGTTGATTTCGATGAAGAGGAGGCGGATGAGGAAGAGGAGGATAGAGGCGGTGGAAAGAAGCGGAGGAGATCTAGTTATATCGATGATGATGCAGATGAGGTTGATGAAGACGAGGAGGAGGATGATGATGGGGACGATGATTATGATGGCGGTGGAAAAACTAGCCGCAAGCGGCAGTATAAGAAAGTTTCTGCTTCGAATTTCTTTGATGAAGAGGCTGAGGTTGATACGGATGATGAAGAGGAGGAAGAAGAAGGCGAAGATGATTTCATTGTTCAGCCTGACAATGACCTGCCAGAGGAAGATGATAATAGAGGGAGGCCACGGCACAGACTGCCGCCCCATCAAGAAGACCATGAAGATCTTGAAGCAGTGGCAAGGAGCATACAGGAGAGATATGGAAAGCATCGGTTAGCAGAATATGAGGAAGAAACTACAGATGTAGAACAACAAGCACTTTTGCCGTCTGTGAGAGACCCAAAGCTGTGGATGGTCAAATGTGCGATTGGCCGCGAGCGTGAAACAGCTGTTTGTCTCCTGCAAAAGTACATAGATAAGGGATCTGAATTGCAAATTAGATCAGCTATTGCTCTTGATCATCTAAAAAATTATATATATGTGGAAGCAGATAAAGAAGCTCATGTTAGAGAGGCTTGCAAAGGTCTTCGAAATATATTTGGACAAAAAATAACCCTTGTCCCAATAAGAGAAATGACCGATGTGCTATCAGTTGAAAGCAAAGCCATTGATCTTGCTAGAGATACATGGGTTAGAATGAAGATAGGCACGTACAAGGGGGACCTCGCCAAAGTAGTGGATGTTGATAATGTGAGGCAAAGGGTTACTGTGAAACTAATTCCGAGAATAGACTTACAGGCTCTTGCAAACAAGTTGGAAGGCCGAGAAGTTGTGAAAAAGAAGGCATTTGTTCCCCCTCCTCGTTTTATGAATGTTGATGAAGCTAGGGAACTGCATATCCGTGTGGAGCATAGGCGTGATGCCTATGGGGAACGGTTTGATGCCATTGGTGGTATGATGTTCAAAGATGGGTTCTTGTACAAAACTGTATCTATTAAATCCATTAGTGCCCAGAACATCAAGCCTACGTTTGACGAGCTCGAAAAGTTTCGAAAACCAGGCGAGGGTGGAGATGTAGCGAGTCTGTCAACTTTGTTTGCGAACAGAAAGAAAGGGCATTTCATGAAGGGTGATGCTGTTATTGTCGTCAAGGGTGATTTGAAGAATTTGAAGGGATGGGTAGAGAAAGTCGATGAGGATAATGTTCATATAAGGCCAGAAATAAAGGGTCTTCCTAAAACTCTTGCAGTAAATGAAAGGGAACTTGTTAAATATTTTGAACCTGGAAACCATGTTAAAGTTGTTTCTGGTGCTCAAGAGGGTGCGACTGGCATGGTTGTAAAGGTGGAGCAGCATGTTCTGATCTTAATATCCGATACCACAAAGGAGCATATCCGTGTGTTTGCAGATGATGTTGTAGAGAGTTCAGAAGTAACCACCGGTGTGACTAAAATTGGGGACTATGAACTTCGTGATCTTGTATTGCTAGATAATTTGAGTTTTGGTGTGATAATTCGTGTAGAGAGTGAGGCATTTCAGGTTCTCAAGGGGGTTCCTGACAGACCTGAAGTTGTTCTTGTTAAATTAAGAGAGATCAAGTGTAAGATAGAGAAGAAAATAAGTGTGCAGGATAGGTTTAAGAATACAATATCATCAAAAGATGTTGTGAAGATAATTGATGGTCCCTGCAGAGGCAAACAAGGTCCTGTGGAGCACATATACAGAGGAATCTTGTTCATCTTTGATCGCCATCATCTTGAACATGCAGGCTTTATATGCGTTAAGGCCCACTCATGTGTAGTTGTGGGAGGTTCCCGCTCCAATGGTGACAGAAATGGTGATGCGTACGGAAGATTCTCCGGTCTTAAAAATCCACCTCGCATTCCACAGTCCCCAAAGAGGTTTTCTCGAGGAGGGCATCCGTCTGATTCTGGAGGGAGGCACAGGGGTGGTGGAAGGGGGCATGATGGTTTGACTGGTGCAACTGTTAAAGTACGCCAGGGTTCGTATAAAGGTTATCGTGGGCGTGTTATAGAAGTTAAAGGAACATTTGTTCGGGTTGAATTGGAGTCTCAGATGAAGGTTGTAACAGTTGATCGCAATCATATAACAGATAATGTGGCTGTTACCCCACAACGTGAAACATCTCGATATGGAATGGGAAGTGAAACCCCAATGCATCCATCTCGAACTCCCTTGCATCCATATATGACTCCGATGAGAGATCCCGGAGCAACTCCAATTCATGATGGAATGAGGACACCTATGCGTGACCGTGCTTGGAATCCTTATGCACCAATGAGTCCTGCTAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAGCCAGTCCACAGTACCAGCCAGGAAGCCCTCCTTCCCGATCATATGAAGCCCCAACTCCCGGTGCTGGTTGGGCTAGTACTCCCGGTGGCAATTATAGTGAGGCCGGAACCCCACGGGACAGTTCTGCCTACGCGAATGCTCCTAGCCCATATTTACCATCAACACCAGGTGGGCAGCCTATGACACCAAATTCTGCGTCTTATCTTCCTGGCACACCTGGAGGACAGCCTATGACTCCAGGAACTGGTGGTCTAGACATGATGTCCCCAGTATTAGGTGGGGACAATGAAGGGCCTTGGCTTATGCCAGACATATTGGTCAATGTACACAGGGCTGGAGAAGAGTCTGTTGGAGTTATAAAAGAAGTTCTTCCGGATGGTTCTTATAAGGTAGCTCTTGGGTCTAGTGGAAATGGCGAAACATTAACGGCCCTTCCTGCTGAAATGGAGGCTGTAATTCCAAAGAAATCCGATAAAATAAAGATAATGGGCGGGGCGTTGCGTGGTTCCACAGGCAAGTTGATCGGTGTGGATGGTACTGATGGCATTGTTAAAGTAGATGATACGTTGGATGTGAAGATTTTAGACTTGGTTATTTTGGCAAAATTAGCTTAA | 3102 | 0.4526 | MSHRGMDRDDEDDEDYEEQGVDFDEEEADEEEEDRGGGKKRRRSSYIDDDADEVDEDEEEDDDGDDDYDGGGKTSRKRQYKKVSASNFFDEEAEVDTDDEEEEEEGEDDFIVQPDNDLPEEDDNRGRPRHRLPPHQEDHEDLEAVARSIQERYGKHRLAEYEEETTDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLLQKYIDKGSELQIRSAIALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGEGGDVASLSTLFANRKKGHFMKGDAVIVVKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNERELVKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTKIGDYELRDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVVLVKLREIKCKIEKKISVQDRFKNTISSKDVVKIIDGPCRGKQGPVEHIYRGILFIFDRHHLEHAGFICVKAHSCVVVGGSRSNGDRNGDAYGRFSGLKNPPRIPQSPKRFSRGGHPSDSGGRHRGGGRGHDGLTGATVKVRQGSYKGYRGRVIEVKGTFVRVELESQMKVVTVDRNHITDNVAVTPQRETSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYAPMSPARDNWEDGNPGSWGASPQYQPGSPPSRSYEAPTPGAGWASTPGGNYSEAGTPRDSSAYANAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVLGGDNEGPWLMPDILVNVHRAGEESVGVIKEVLPDGSYKVALGSSGNGETLTALPAEMEAVIPKKSDKIKIMGGALRGSTGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLA* | 1034 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa5g1891 | 1033 | CDD | KOW_Spt5_6 | 977 | 1033 | IPR041980 | - | |
| Psa5g1891 | 1033 | CDD | NGN_Euk | 181 | 263 | IPR039385 | - | |
| Psa5g1891 | 1033 | Pfam | Spt5 transcription elongation factor, acidic N-terminal | 88 | 175 | IPR022581 | - | |
| Psa5g1891 | 1033 | CDD | KOW_Spt5_3 | 471 | 521 | IPR041976 | - | |
| Psa5g1891 | 1033 | Gene3D | - | 161 | 263 | IPR036735 | GO:0006355 | |
| Psa5g1891 | 1033 | CDD | KOW_Spt5_2 | 420 | 470 | IPR041975 | - | |
| Psa5g1891 | 1033 | SUPERFAMILY | Translation proteins SH3-like domain | 463 | 522 | IPR008991 | - | |
| Psa5g1891 | 1033 | PANTHER | SUPPRESSOR OF TY 5 | 28 | 1033 | IPR039659 | GO:0006357|GO:0032784 | |
| Psa5g1891 | 1033 | MobiDBLite | consensus disorder prediction | 686 | 700 | - | - | |
| Psa5g1891 | 1033 | MobiDBLite | consensus disorder prediction | 118 | 139 | - | - | |
| Psa5g1891 | 1033 | CDD | KOW_Spt5_1 | 274 | 311 | IPR041973 | - | |
| Psa5g1891 | 1033 | MobiDBLite | consensus disorder prediction | 33 | 49 | - | - | |
| Psa5g1891 | 1033 | MobiDBLite | consensus disorder prediction | 664 | 708 | - | - | |
| Psa5g1891 | 1033 | CDD | KOW_Spt5_4 | 599 | 641 | IPR041977 | - | |
| Psa5g1891 | 1033 | ProSitePatterns | Ribosomal protein L24 signature. | 423 | 440 | IPR005825 | GO:0003735|GO:0005840|GO:0006412 | |
| Psa5g1891 | 1033 | SMART | nusgn_4 | 179 | 265 | IPR006645 | GO:0140673 | |
| Psa5g1891 | 1033 | MobiDBLite | consensus disorder prediction | 831 | 856 | - | - | |
| Psa5g1891 | 1033 | PIRSF | Spt5 | 2 | 1033 | IPR017071 | GO:0006357|GO:0032784 | |
| Psa5g1891 | 1033 | PANTHER | TRANSCRIPTION ELONGATION FACTOR SPT5 | 28 | 1033 | - | - | |
| Psa5g1891 | 1033 | MobiDBLite | consensus disorder prediction | 10 | 32 | - | - | |
| Psa5g1891 | 1033 | MobiDBLite | consensus disorder prediction | 1 | 139 | - | - | |
| Psa5g1891 | 1033 | MobiDBLite | consensus disorder prediction | 50 | 68 | - | - | |
| Psa5g1891 | 1033 | MobiDBLite | consensus disorder prediction | 91 | 117 | - | - | |
| Psa5g1891 | 1033 | Pfam | Early transcription elongation factor of RNA pol II, NGN section | 181 | 262 | IPR005100 | - | |
| Psa5g1891 | 1033 | Gene3D | - | 414 | 471 | IPR014722 | - | |
| Psa5g1891 | 1033 | Pfam | KOW motif | 474 | 499 | IPR005824 | - | |
| Psa5g1891 | 1033 | Gene3D | - | 688 | 752 | IPR014722 | - | |
| Psa5g1891 | 1033 | Gene3D | - | 270 | 312 | IPR014722 | - | |
| Psa5g1891 | 1033 | SMART | kow_9 | 270 | 297 | IPR005824 | - | |
| Psa5g1891 | 1033 | SMART | kow_9 | 471 | 498 | IPR005824 | - | |
| Psa5g1891 | 1033 | SMART | kow_9 | 702 | 729 | IPR005824 | - | |
| Psa5g1891 | 1033 | SMART | kow_9 | 595 | 622 | IPR005824 | - | |
| Psa5g1891 | 1033 | SMART | kow_9 | 419 | 446 | IPR005824 | - | |
| Psa5g1891 | 1033 | SMART | kow_9 | 982 | 1009 | IPR005824 | - | |
| Psa5g1891 | 1033 | Gene3D | - | 474 | 523 | IPR014722 | - | |
| Psa5g1891 | 1033 | CDD | KOW_Spt5_5 | 704 | 750 | IPR041978 | - | |
| Psa5g1891 | 1033 | SUPERFAMILY | Translation proteins SH3-like domain | 412 | 450 | IPR008991 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa5g1891 | Psa-Chr5 | 146134689 | 146142760 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa5g1891 | K15172 | - | gmx:100801380 | 1719.52 |