Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1886 ATGGTCCGAGAAAAAGATGTCTGTTGGGAATATGCAGAGAAATTAGATGGGAACAAGGTTAAATGTAAATTTTGCCAAAGAGTTTTAAATGGTGGTATTAGTAGGTTGAAGCATCATTTATCGCGATTTCCAAGCAAAGGAGTGAATCCTTGCAGTAAGGTCCGAGACGACGTTACTGACCGAGTGAGGAATATAATTGCATCAAAGGAAGAGGTTAAAGAAACATCTTTTGGGAAGAAACAAAAAACACCAGAAGTTAGTCTTTCTGCAACCAAAACTCTTATATCTTTGGACACATCAATATCTCCTATTACAAAGATGTTTCCTTCTAGCATTCCTATGACTCCCTCTTCAACAAACAACCAAGAGAATGCAGAGAGAAATATTGCTCTATTCTTTTTCGAGAATAAGCTAGACTTCAGTGTTGCGAGGTCTTCGTCGTATCAGTTGATGATTGACGCCGTTGCAAAGTGTGGTCCTGGGATTATAGGCCCGTCAGCTGAAATTCTGAAAACAGCGTGGTTGGAGAGGATAAAAACAGAAGTCGGGTTACAATCGAAAGACGTCGAGAAAGAGTGGGCTACTACTGGTTGTACCATTATTGCGGACACGTGGACTGATTATAAATCAAAGGCCATTATTAATTTCTTAGTCTCGTCACCGTCCAGGATTTTTTTCCACAAATCAGTGGACGCGTCTGCGTATTTCAAGAACACGAAATGGCTCGCTGATCTTTTTGATTCTGTAATTCAGGAGTTTGGTCCGGAAAATGTTGTGCAAATTATTATGGATAGCAGCTTTAACTACACTGGCATCGGTAATCATATAGTGCAGAACTACGGAACGATATTTGTATCTCCTTGTGCCTCTCAATGTTTGAATCTAATATTGGAGGATTTCACCAAGGTTGATTGGATTAGTAGATGCATTTTACAAGCGCAAACCATATCGAAGCTAATATACAACAATGCTTCATTGCTTGATCTTATGAAGAAGTATAATGGAGGTCAGGAACTTATCAGGACCGGGGCGACAAAATCTGTATCCACCTTCCTGTCTTTGCAGTCTATGTTGAAGCTAAGAACAAGATTGAAGCATATGTTTCACAGCCCCGAATATGCATCGAACACTTCCTATGTAAATAAACCCCAAAGTCTTTCCTGTATTGCAATTGCTGAAGATGGTGATTTCTGGAGGACAGTGGAAGAGTGTGTGGCCATCTCTGAGCCATTTTTGAAGGTGTTAAGAGAAGTATCGGAAGGGAAACCAACAGTAGGTTCGATATATGAACTAATGACTAGGGCCAAAGAATCCATCAGGACATACTACATAATGGATGAGAACAAATGCAAGACATTCTTAGATATAGTTGATAAAAAATGGAGGGAACAACTTCATTCCCCTCTACATGCAGCTGCAGCTTTTTTAAACCCCGGAATTCAGTACAATCCTGAAATAAAATTTCTCTCGTCTATTAAAGAAGACTTCTACAATGTTCTGGAGAAGTTGCTTCCTGTACCAGATATGAGGCGCGACATGACCAATCAAATCTATACGTTTACAAAGGCACACGGAATGTTTGGTTGTAGCCTAGCAAAGGAAGCGAGAAACACAGTTGCACCATGGCTTTGGTGGGAACAGTATGGTGATTCTGCTCCGGGGCTGCAACGAGTCGCCATTAGAATATTAAGTCAAGTTTGTAGCACTTTCTCACTTCAGAGGCATTGGAGTACCTTTCGGCAAATTCACTCCGAGAAAAAGAATAAAATTGATCGAGAAACGCTGAATGACCTTGTTTATGTAAACTACAATCTCAAGTTGAATAGGCAGATGAATGCAAAGTCTTTAGAAGTTGATATGCTTCAATTAGATGATATTGACATGACTTCTGAATGGGTGGAAGAAAATGAAACTGCAAGTCCAACTCAGTGGCTAGATCGTTTTGGTACAGCCTTGGATGGCAATGATTTGAACACGAGACAGTTTGGTAGTTCTATATTTGGCGCAAATGACCCAATATTTGGATTGTAA 2031 0.4008 MVREKDVCWEYAEKLDGNKVKCKFCQRVLNGGISRLKHHLSRFPSKGVNPCSKVRDDVTDRVRNIIASKEEVKETSFGKKQKTPEVSLSATKTLISLDTSISPITKMFPSSIPMTPSSTNNQENAERNIALFFFENKLDFSVARSSSYQLMIDAVAKCGPGIIGPSAEILKTAWLERIKTEVGLQSKDVEKEWATTGCTIIADTWTDYKSKAIINFLVSSPSRIFFHKSVDASAYFKNTKWLADLFDSVIQEFGPENVVQIIMDSSFNYTGIGNHIVQNYGTIFVSPCASQCLNLILEDFTKVDWISRCILQAQTISKLIYNNASLLDLMKKYNGGQELIRTGATKSVSTFLSLQSMLKLRTRLKHMFHSPEYASNTSYVNKPQSLSCIAIAEDGDFWRTVEECVAISEPFLKVLREVSEGKPTVGSIYELMTRAKESIRTYYIMDENKCKTFLDIVDKKWREQLHSPLHAAAAFLNPGIQYNPEIKFLSSIKEDFYNVLEKLLPVPDMRRDMTNQIYTFTKAHGMFGCSLAKEARNTVAPWLWWEQYGDSAPGLQRVAIRILSQVCSTFSLQRHWSTFRQIHSEKKNKIDRETLNDLVYVNYNLKLNRQMNAKSLEVDMLQLDDIDMTSEWVEENETASPTQWLDRFGTALDGNDLNTRQFGSSIFGANDPIFGL* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1886 676 SUPERFAMILY Ribonuclease H-like 187 609 IPR012337 -
Psa5g1886 676 PANTHER OSJNBA0013A04.12 PROTEIN 2 670 - -
Psa5g1886 676 Pfam hAT family C-terminal dimerisation region 537 605 IPR008906 GO:0046983
Psa5g1886 676 PANTHER HAT TRANSPOSON SUPERFAMILY 2 670 - -
Psa5g1886 676 Pfam Protein of unknown function (DUF 659) 165 316 IPR007021 -
Psa5g1886 676 ProSiteProfiles Zinc finger BED-type profile. 3 58 IPR003656 GO:0003677
Psa5g1886 676 Pfam BED zinc finger 7 42 IPR003656 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1886 Psa-Chr5 145263296 145266351 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1886 - - gmx:100808813 1239.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1886 5 145263296 145266351 Psa5g1886 5 145263296 145266351 ECH