Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1868 ATGGTGGATTCAGACCGAATCCAAAACCCATGGATGGCGTCGGAACAAACTCCAATGAATCCAACCAACGCTACACAACGCTCTTCTCCTCCGTCGAAATCATCTAATAGTGATAATTTAGGGATTCCTGAACGCGCTTTCTCTGCCGCCGGCGCCGCTGTTCTCTCCGCCGTCATTGTCAACCCCCTTGATGTTGCCAAGACAAGGTTGCAAGCACAAGCTGCAGGGGTTGCTTATTCTCATCCACTCAGTAATTTGATCAGCAGAATGTCTTGTTTTGGCCCAAATATGATGTTTGCTGATTTAAGATGTTCTCCATCGTGTACCCGGGCTGGATTCCATGGCACTGTATCACTCTGTCCTCCCGATTGTTTTCGGTACAAAGGAACACTAGATGTCATGTATAAAGTTACACAACAGGAAGGATTTACTAGGCTATGGAGAGGCACCAATGCAGGCCTCGCACTTGCAGTACCGACTGTTGGAATTTACCTTCCTTGCTATGACATATTTCGCAACTGGTTCGAGGAGTACACAGCCAAAAATGCTCCCATCGCAACTCCGTATGTACCTTTAGTGGCTGGTTCGTTGGCACGCTCATTGGCTTGTGCAACTTGTTATCCTATTGAACTTGCCAAAACTCGCATGCAGGCATTTAAAGAGACTCAAGTCGGGCAAAAGCCACCTGGAGTATACAAGACTTTGCTAGGTGTTGTCTCTAATGTCAAGCGCACAAGTAATTCACCGAACAGCTTGCAAGGTTATCGTGCCCTGTGGACTGGCATGGGCGCACAGCTTGCTCGTGATGTACCATTCTCTGCAATTTGTTGGTCGACGCTTGAGCCTACCAGAAGGAAACTTATTAGCTTGGTTGGAGGCGATGATGCCGGTATATTGAGTGTTCTTGGTGCAAATTTTTCAGCTGGTGTTGTTGCAGGAACTCTAGCGGCTGGAGCTACGTGTCCACTAGATGTTGCAAAAACACGAAGACAGATAGAGATGGATCATGTCAGAGCTTTGAAGATGACTACAAGACAGACACTGATCGAGATTTGGAGAGACGGAGGCTTGAAAGGACTTTTTACTGGTTTTGGTCCGCGAGTTGGTCGAGCTGGCCCCTCTGTTGGAATCGTGGTTTCGTTTTATGAAGTTGTAAAGTTTGTCTTAAATCACCGGAACGTAACAACATGA 1191 0.4702 MVDSDRIQNPWMASEQTPMNPTNATQRSSPPSKSSNSDNLGIPERAFSAAGAAVLSAVIVNPLDVAKTRLQAQAAGVAYSHPLSNLISRMSCFGPNMMFADLRCSPSCTRAGFHGTVSLCPPDCFRYKGTLDVMYKVTQQEGFTRLWRGTNAGLALAVPTVGIYLPCYDIFRNWFEEYTAKNAPIATPYVPLVAGSLARSLACATCYPIELAKTRMQAFKETQVGQKPPGVYKTLLGVVSNVKRTSNSPNSLQGYRALWTGMGAQLARDVPFSAICWSTLEPTRRKLISLVGGDDAGILSVLGANFSAGVVAGTLAAGATCPLDVAKTRRQIEMDHVRALKMTTRQTLIEIWRDGGLKGLFTGFGPRVGRAGPSVGIVVSFYEVVKFVLNHRNVTT* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1868 396 ProSiteProfiles Solute carrier (Solcar) repeat profile. 186 286 IPR018108 -
Psa5g1868 396 SUPERFAMILY Mitochondrial carrier 41 384 IPR023395 -
Psa5g1868 396 MobiDBLite consensus disorder prediction 9 38 - -
Psa5g1868 396 ProSiteProfiles Solute carrier (Solcar) repeat profile. 300 388 IPR018108 -
Psa5g1868 396 ProSiteProfiles Solute carrier (Solcar) repeat profile. 40 174 IPR018108 -
Psa5g1868 396 MobiDBLite consensus disorder prediction 1 38 - -
Psa5g1868 396 Pfam Mitochondrial carrier protein 189 287 IPR018108 -
Psa5g1868 396 Pfam Mitochondrial carrier protein 304 392 IPR018108 -
Psa5g1868 396 Pfam Mitochondrial carrier protein 40 177 IPR018108 -
Psa5g1868 396 Gene3D Mitochondrial carrier domain 20 100 IPR023395 -
Psa5g1868 396 Gene3D Mitochondrial carrier domain 104 394 IPR023395 -
Psa5g1868 396 PANTHER BNACNNG35730D PROTEIN 24 392 - -
Psa5g1868 396 PANTHER FI19922P1-RELATED 24 392 IPR045315 GO:1990542
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1868 Psa-Chr5 143232879 143237836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1868 34 388 Miscellaneous Gene Families AT3G54110 24.370 4.32e-17 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1868 K15119 - gmx:100810960 652.899