Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1816 ATGGGAGACGACGCAGAAAGAGGTTTGGGATGCCAGAAGATTATGGATGGGAAGGAGAGTAACAGGAATGGCTTGGAGAAGGAAATTCCTTCCTGTTGTTTGAAAGCCATGGCTTCAGCACCTGAGTTGGACTCAAACTGTCACTCTACTGTTGTTTCTGGGTGGTTCTCAGAATCTCAAACTTCCTCTGGGAAATCTGGGGGAGTTGTTTATTTCAACAACCCAATGTGGCCGGGAGAAGCCCATTCAATCAAAGTGGAGAAGATATTGTTCAAGGAAAAGTCATTATACCAAGAGGTCTTGGTTTTTGAGTCATTAACATATGGGAAAGTTCTTGTTCTTGATGGGATTGTTCAGTTGACTGAGAAGGATGAATGTGCTTACCAGGAGATGATAACTCATCTTCCCCTCTGTTCCATTCCATCCCCCAAAACTGTTTTAGTTGTTGGTGGCGGAGATGGTGGGGTTCTAAGGGAAATATCCCGTCACAGCTCTGTGGAGCATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCCAGAGTTAGCTGTTGGGTTTGACGATCCTCGTGTACACTTGCATGTTGGCGATGCTATTGAATTTCTTAAACATGCTCCTGAAGGGAGGTATGACGCTGTGATTGTTGATTCCTCAGATCCTGTGGGTCCTGCCCAGGAACTTGTAGAGAAACCATTTTTTGAGACTATATCTAACGCATTAAGACCTGGTGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACACCTTATCCAAGACATGATCTCCATTTGTCGAGTAACATTTAAAGGTTCGGTACATTATGCATGGACAAGTGTTCCAACATATCCAAGTGGTGTGATTGGGTTTCTTCTTTGCTCAACAGAGGGGCCACATGTTGATTTTGTGAACCCCATCAATCCCATTGAAAAGTTAGAAGGTGCTGATAAGCACAAAAGGAAACTTAGGTTCTATAACTCAGAGATGCATTCAGCTGCTTTTGCACTGCCTTCTTTTCTGAAGAATGAATTGAGCTTGCCGGGTGATTATCCTCGTCAGTAG 1089 0.4279 MGDDAERGLGCQKIMDGKESNRNGLEKEIPSCCLKAMASAPELDSNCHSTVVSGWFSESQTSSGKSGGVVYFNNPMWPGEAHSIKVEKILFKEKSLYQEVLVFESLTYGKVLVLDGIVQLTEKDECAYQEMITHLPLCSIPSPKTVLVVGGGDGGVLREISRHSSVEHIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGDAIEFLKHAPEGRYDAVIVDSSDPVGPAQELVEKPFFETISNALRPGGVLCNMAESMWLHTHLIQDMISICRVTFKGSVHYAWTSVPTYPSGVIGFLLCSTEGPHVDFVNPINPIEKLEGADKHKRKLRFYNSEMHSAAFALPSFLKNELSLPGDYPRQ* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1816 362 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 68 353 IPR029063 -
Psa5g1816 362 Hamap Polyamine aminopropyltransferase [speE]. 54 354 IPR001045 GO:0003824
Psa5g1816 362 Pfam Spermidine synthase tetramerisation domain 75 122 IPR035246 -
Psa5g1816 362 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 53 304 IPR030374 -
Psa5g1816 362 Pfam Spermine/spermidine synthase domain 125 311 - -
Psa5g1816 362 PANTHER SPERMINE SYNTHASE 1 355 - -
Psa5g1816 362 Gene3D Spermidine synthase, tetramerisation domain 46 119 IPR037163 -
Psa5g1816 362 Gene3D Vaccinia Virus protein VP39 120 355 IPR029063 -
Psa5g1816 362 PIRSF Spermidine_synth 43 356 IPR030668 GO:0006595
Psa5g1816 362 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 146 159 IPR030373 -
Psa5g1816 362 TIGRFAM speE: spermidine synthase 79 348 IPR001045 GO:0003824
Psa5g1816 362 CDD AdoMet_MTases 167 253 - -
Psa5g1816 362 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 355 IPR001045 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1816 Psa-Chr5 139756027 139760954 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1816 K00797 - cit:102621922 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1816 5 139756027 139760954 Psa5g1816 5 139756027 139760954 ECH