Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1814 ATGGCACTCTCAAAAGCCACCTTCCTCGCGCACCTCAAAGCCGTGGCACAACCTCACAGACACATTCGAATCCGGCCACCGTCTTCCATTTACCCTCGCTTCCTCTCTTTCTCCTCCCCGGAAGAAGCCGCCGCAGAACGCCGTCGTCGTAAGCGACAGATCCGCATCGAACCACCTCTCTCCGCTCTTAACCGCAACCAACAAGCACCCAATCAAAACCCTAAATCACAATCCCCACCCTATTACCTCAATCCCAGTAACCCTAAACTCCCCGAACACGCTTCCGCCTTAACCGGTAACCGTCTCAACCTTCACAACCGTATTCTAACCCTAATCCGAGAGAATAATCTTGATGAAGCTGCACTCTACACGCGCCACTCCATTTATTCCAATTGCCGTCCGACTATCTTCACCATAAACGCGGTCCTCTACGCTCTCCTTCGTCAGTCTCGCTATTCCGACCTCCTCTCACTCCACCGTTTCATTACGCAAGCTGGCGTAGTTCCGAATATTATTACTCACAATCTTATCTTTCAGACCTATCTTGATTGCCGCAAGCCGGATACTGCTCTTGAGCATTTCAAACAATTCATCAATGATGCTCCTGTTAACCCTTCTCCCACCACCTTCCGCATTGTTGTCAAGGGTTTGGTTGATAATAATAAGCTTGACCGCGCCATGGATATCAAGGGCCAAATGGATGATAAAGGTTTTGGACCTGACCCTCTTGTTTATCATTATTTGATGTTGGGTCATGCTAGGAATTCCGATGGGGATGGTGTTTTAAGGCTTTATGAGGAATTGAAAGGGATGCTTGGCGGGGTTGTGGAAGATGGGGTTGTTTTGGGGTGTTTGATGAAGGGTTATTTTCTCAAGGGGATGGAGAAGGAGGCTTTAGAGTGTTATCAAGAGGCTTTTGCAGAGGCAAAAAAGATGAGCGACATTGCTTATAATTCAGTGCTTGATGCTCTTACCAAGAATGGAAAGTTTGATGAAGCATTGAAGCTTTTTGATAGGATGATCAAGGAGCATAATCCTCCTGTTAAGTTGGCTCTTAATTTGGGAAGCTTTAATGTTATGGTGGATGGTTATTGTGCTGAGGGAAGATTCAAGGAGGCGATTCAGGTTTTTAGGAGCATGGGTGAGTATCGTTGCAGGCCAGATACACTGTCCTTTAACAACTTGATTGAGCAGTTGTGTAATAACGGGATGATTTTGGAAGCTGAGGAGGTTTATGGAGAAATGGAGGGTAAAGGGGTAAACCCTGATGAGTATACATATGGCTTGTTGATGGATACTTGCTTCAAAGAGAACAGGCCTGATGATGCTGCTAGCTATTTCAAAAAAATGGTGGAATCAGGCTTGAGGCCTAACTTGGCTGTTTACAATAGGTTGGTTGATGGGTTGGTTAAAGTTGGGAAGATTGATGATACAAAGTCTTTCTTTGACCTAATGGTGAAGAAGCTCAAGATGGATGTTGCTAGCTATCAGTTCATGATGAAGGTGCTGAGTGAGGAAGGAAGGTTGGACGAGGTACTTCAAATTGTTGATATGTTGTTGGATGACAATGGCGTCGACTTTGATGAGGAGTTCCAAGAGTTTGTTAAAGGGGAGTTGAGAAAAGAAAGGAGAGAAGACGACTTGGCCAAATTGATAGAGGAGAAGGAAAGGTTGAAAGCTGAAGCTAAGGCTAAGGAGGCTGAGGAAGCAGAAGCTGCTAAAAAAAGAGTAGGATCTGGAATTTTATTAACTTCCAAGTTGTTCGGGAATAAGGAAGCTGAGTCAGAGAGCACTGATGCCACTGCTACTGAGTCACATTTGACAGAGAAAACAACTGAAGCTGATGGTTTGAATGAAGCAGAGGCTAAAAGTGATAGAACAAGTGAACAACTAACAGCTTGA 1902 0.4495 MALSKATFLAHLKAVAQPHRHIRIRPPSSIYPRFLSFSSPEEAAAERRRRKRQIRIEPPLSALNRNQQAPNQNPKSQSPPYYLNPSNPKLPEHASALTGNRLNLHNRILTLIRENNLDEAALYTRHSIYSNCRPTIFTINAVLYALLRQSRYSDLLSLHRFITQAGVVPNIITHNLIFQTYLDCRKPDTALEHFKQFINDAPVNPSPTTFRIVVKGLVDNNKLDRAMDIKGQMDDKGFGPDPLVYHYLMLGHARNSDGDGVLRLYEELKGMLGGVVEDGVVLGCLMKGYFLKGMEKEALECYQEAFAEAKKMSDIAYNSVLDALTKNGKFDEALKLFDRMIKEHNPPVKLALNLGSFNVMVDGYCAEGRFKEAIQVFRSMGEYRCRPDTLSFNNLIEQLCNNGMILEAEEVYGEMEGKGVNPDEYTYGLLMDTCFKENRPDDAASYFKKMVESGLRPNLAVYNRLVDGLVKVGKIDDTKSFFDLMVKKLKMDVASYQFMMKVLSEEGRLDEVLQIVDMLLDDNGVDFDEEFQEFVKGELRKERREDDLAKLIEEKERLKAEAKAKEAEEAEAAKKRVGSGILLTSKLFGNKEAESESTDATATESHLTEKTTEADGLNEAEAKSDRTSEQLTA* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1814 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Psa5g1814 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Psa5g1814 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Psa5g1814 633 MobiDBLite consensus disorder prediction 606 626 - -
Psa5g1814 633 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 602 - -
Psa5g1814 633 SUPERFAMILY TPR-like 104 512 IPR011990 GO:0005515
Psa5g1814 633 MobiDBLite consensus disorder prediction 590 605 - -
Psa5g1814 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 458 488 IPR002885 -
Psa5g1814 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Psa5g1814 633 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 602 - -
Psa5g1814 633 Gene3D Tetratricopeptide repeat domain 309 436 IPR011990 GO:0005515
Psa5g1814 633 Gene3D Tetratricopeptide repeat domain 93 222 IPR011990 GO:0005515
Psa5g1814 633 Gene3D Tetratricopeptide repeat domain 437 563 IPR011990 GO:0005515
Psa5g1814 633 Gene3D Tetratricopeptide repeat domain 223 308 IPR011990 GO:0005515
Psa5g1814 633 MobiDBLite consensus disorder prediction 588 633 - -
Psa5g1814 633 MobiDBLite consensus disorder prediction 42 80 - -
Psa5g1814 633 Pfam PPR repeat family 387 435 IPR002885 -
Psa5g1814 633 Pfam PPR repeat 353 380 IPR002885 -
Psa5g1814 633 Coils Coil 541 575 - -
Psa5g1814 633 MobiDBLite consensus disorder prediction 42 56 - -
Psa5g1814 633 MobiDBLite consensus disorder prediction 60 80 - -
Psa5g1814 633 Pfam PPR repeat 283 304 IPR002885 -
Psa5g1814 633 Pfam PPR repeat 461 488 IPR002885 -
Psa5g1814 633 Pfam PPR repeat 316 343 IPR002885 -
Psa5g1814 633 Pfam PPR repeat 209 238 IPR002885 -
Psa5g1814 633 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Psa5g1814 633 TIGRFAM PPR: pentatricopeptide repeat domain 209 241 IPR002885 -
Psa5g1814 633 TIGRFAM PPR: pentatricopeptide repeat domain 356 389 IPR002885 -
Psa5g1814 633 TIGRFAM PPR: pentatricopeptide repeat domain 461 488 IPR002885 -
Psa5g1814 633 TIGRFAM PPR: pentatricopeptide repeat domain 316 343 IPR002885 -
Psa5g1814 633 TIGRFAM PPR: pentatricopeptide repeat domain 425 458 IPR002885 -
Psa5g1814 633 TIGRFAM PPR: pentatricopeptide repeat domain 391 424 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1814 Psa-Chr5 139535630 139538968 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1814 293 537 Glycosyltransferase AT1G05670 23.904 9.82e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1814 - - lja:Lj0g3v0082099.1 944.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1814 5 139535630 139538968 Psa5g1814 5 139535630 139538968 ECH