Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1773 ATGGAGAGGTCTAGATCCAAAAGGAATTACTACTATGACCATGAATATGATTCTGAAACCTTTGCGAGAACTAGACCACGCTATAATCACCACCACCACCATAGCAGCTCCTACCGCCACCGTGGTGCCGGGGACCGCGGCGGAGATCGCGGCGGCGGACGGCATCATCTTAAGACCTATGACTCACCGTTAACGGTGACTACTAGTTACCGCATTCTTTGCCATGACATGAAGGCCGGCGGGGTGATTGGGAAGTCCGGTAGTATTATTAAGTCAATTAGGCAGCACACCGGCGCGTGGATCAACGTGCATGAACCGGTAGCTGGGGATGAGGAGCGGATTATCGAGATTTCTGACACGCGCCGGCGGGATCCGGATGGGAGGATGCCGTCATTTTCGCCGGCGCAGGAGGCGTTGCTGCTAATTCATGACAGGATTTTAGAGAGCGATCCGGGGTTTGTTGAGGAGGAGGATGAGTACGGTGGAGGAAGAGGCGGTGGCGGGAGCAAGCGAGTGTCTAGTAGGTTGATTGTTTCGAAAATGCATGTTGGGTGTTTGTTGGGAAAAGGAGGGAAGATAATTGAACAAATGAGGATTGAAACGAAGACACAAATTAGGATTCTACCTAGAGATCACAATCTACCTCGCTGTGTTGCACTGTCTGAAGAGATTGTTCAGGTTTCAGGGGACATTCATAATGTTAAGACTGCTTTTCAAATCATATCTTCCCGGTTGAGGGAGAGTCAGCATCGTGATCGTAGTTTGGGTGGTGGTGGTGGTGGTGGTGGTCATTTCCATGGACGCGGATATTCGCCAGAGCGTTATTACGCCCCTGATGATGATTATGTTCCGTATGTGACTAGTGGTTCTCGGAGATCATCTGTGGAGAGGGCTAGTTTTGGATCTCGAGCAGCTAACACCAATTCCAGAAACAATAACCGGAGCTCGTTAGCTTATGTAATGGATAGGGGGATTTCTCCTGTGGCTGATGATGGACAACCCTTCTATGATGCCCTTGTTTTTCGTATACTTTGTCCAGTTGATAGAGTCGATCGCATTGTTGGGGAATCAGATGGAATTATGGGGCTTCTTCAGAATGAAGTTGGCGTAAATGTTAAGGTCGCTGATCCTGTTGGCGGCTCCGATGAACAGATAGTTATCATTACTTCAGATGAGGGTCCCGATAATTCGATGTTCCCAGCTCAGGAAGCTTTGTTACATATACAAACCCGCATTGCTGATCTTGTTCTAGATAGGGATAATATAATTACCACCAGGCTTGTTGTCCCTAGAAGGGACATTGAATGCTTAGATGGAAACAATGCATCACTGTCCGAAATAGGGAGATTGACTGGCGCAAGTATTCAAATAATTCCTAGAGAAGAACTACCGCCCTGCGTTGCAAACACCGATGAATTGGTTCAGATTGTGGGAGAGATAAAAGAAGCCCGAGAAGCTGTTCTTGATGTGACTTCAAGATTAAGAAGTTATGTCTATAGGGATTTCTTGCAAAGGGACACAGTTCCTCCATCTGCCCCCTTTCCTGGTGTGGATGCATCTTCTTCTCATAACATGGCCACAGTTGCTGAACCTGCCACTACCAATCAGAATGTGCAAAGTGTGGCAGTAGCCCTTGCGTCAAAGGAAACTGGTGGATCTAGCACTGAGTCGGGAAAGCAGAAAGAAAGTGATCGCCGTGATGATTTGCCTAGTGGTTTAAATAGGGCCGTGTCTCTTGTCACGAGGAGTATACTTGAAGTTGTCATACCAGAGTATGCAGTTCCAAAGCTTTTGGCAAAATCCAAAAGCAAGCTTGCCCAGATAAGTGAGTTATCGGGAGCCAGTGTAACGCTTATAGAGGATAGACCAGATGAGAAAGAGAAGATTATTCAGTTAGCCGGTACTCCAGAGCAGGCAGAGAGAGCGCAAAGCTTACTCCAAGGATTTATTTTGAGCACCCAAGAAGATGGTCCTTAA 1977 0.4734 MERSRSKRNYYYDHEYDSETFARTRPRYNHHHHHSSSYRHRGAGDRGGDRGGGRHHLKTYDSPLTVTTSYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHEPVAGDEERIIEISDTRRRDPDGRMPSFSPAQEALLLIHDRILESDPGFVEEEDEYGGGRGGGGSKRVSSRLIVSKMHVGCLLGKGGKIIEQMRIETKTQIRILPRDHNLPRCVALSEEIVQVSGDIHNVKTAFQIISSRLRESQHRDRSLGGGGGGGGHFHGRGYSPERYYAPDDDYVPYVTSGSRRSSVERASFGSRAANTNSRNNNRSSLAYVMDRGISPVADDGQPFYDALVFRILCPVDRVDRIVGESDGIMGLLQNEVGVNVKVADPVGGSDEQIVIITSDEGPDNSMFPAQEALLHIQTRIADLVLDRDNIITTRLVVPRRDIECLDGNNASLSEIGRLTGASIQIIPREELPPCVANTDELVQIVGEIKEAREAVLDVTSRLRSYVYRDFLQRDTVPPSAPFPGVDASSSHNMATVAEPATTNQNVQSVAVALASKETGGSSTESGKQKESDRRDDLPSGLNRAVSLVTRSILEVVIPEYAVPKLLAKSKSKLAQISELSGASVTLIEDRPDEKEKIIQLAGTPEQAERAQSLLQGFILSTQEDGP* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1773 658 Gene3D K Homology domain, type 1 582 653 IPR036612 GO:0003723
Psa5g1773 658 Pfam KH domain 175 242 IPR004088 GO:0003723
Psa5g1773 658 Pfam KH domain 585 647 IPR004088 GO:0003723
Psa5g1773 658 Pfam KH domain 70 118 IPR004088 GO:0003723
Psa5g1773 658 Gene3D - 338 498 - -
Psa5g1773 658 MobiDBLite consensus disorder prediction 23 58 - -
Psa5g1773 658 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 337 394 IPR036612 GO:0003723
Psa5g1773 658 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 415 502 IPR036612 GO:0003723
Psa5g1773 658 SMART kh_6 170 246 IPR004087 GO:0003676
Psa5g1773 658 SMART kh_6 337 413 IPR004087 GO:0003676
Psa5g1773 658 SMART kh_6 581 651 IPR004087 GO:0003676
Psa5g1773 658 SMART kh_6 66 147 IPR004087 GO:0003676
Psa5g1773 658 SMART kh_6 421 495 IPR004087 GO:0003676
Psa5g1773 658 MobiDBLite consensus disorder prediction 546 570 - -
Psa5g1773 658 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 172 252 IPR036612 GO:0003723
Psa5g1773 658 CDD PCBP_like_KH 69 143 - -
Psa5g1773 658 ProSiteProfiles Type-1 KH domain profile. 582 646 - -
Psa5g1773 658 MobiDBLite consensus disorder prediction 40 57 - -
Psa5g1773 658 ProSiteProfiles Type-1 KH domain profile. 67 139 - -
Psa5g1773 658 CDD PCBP_like_KH 175 242 - -
Psa5g1773 658 ProSiteProfiles Type-1 KH domain profile. 171 241 - -
Psa5g1773 658 CDD KH-I 584 647 - -
Psa5g1773 658 Gene3D K Homology domain, type 1 169 248 IPR036612 GO:0003723
Psa5g1773 658 Gene3D K Homology domain, type 1 66 149 IPR036612 GO:0003723
Psa5g1773 658 ProSiteProfiles Type-1 KH domain profile. 338 405 - -
Psa5g1773 658 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 544 - -
Psa5g1773 658 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 572 652 IPR036612 GO:0003723
Psa5g1773 658 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 62 118 IPR036612 GO:0003723
Psa5g1773 658 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1773 Psa-Chr5 137668226 137673930 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1773 K21444 - gmx:100804167 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1773 5 137668226 137673930 Psa5g1773 5 137668226 137673930 ECH