Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1756 ATGTCTGACGCTTATTGGAGATACGCCGAATCCCAGCACGCCCCCTCCGCCATCCCCGCCAAACGTCCCCGTCCCGATTACGATGTCTCTGGCGTTCATGACTTGGCCAGTTACTATCCCCATGATGCTGATAGAGGAAGGCTCCAAGTAGTTAGAGATACTGAATCCCTTGATGCATCCTATGAGCGTTACCTCCGTAATGCGATTTCAACTTATGGTCCCGGCCAGCCCACTAGAACCATTGACGGGGGAGTTCCCAGTCATTCTGTTGACGAGTCTCATGTCGCTAATATTGGAGGAGTAGACCGAAGATCACATGTAAATGACAAAATCCAGGAATTAAGTGGTGGAAGGTCTGATCATTCGCTTCCGCATGGTGCTACGAATACAGTATTTGTGGAGGGTTTACCTTCCAACTGTACAAGACGGGAAGTAGCACATATTTTTCGTCCTTTTGTAGGCTACAAAGAAGTTAGACTTGTTAGCAAGGAATCAAGACAACCTGGGGGTGATCCACTGTTACTTTGTTTTGTTGACTTTGTAAGCCCGGCTCATGCAGCAACTGCCATGGATGCATTGCATGGTTACAAATTTGACGAGCTTGACCGCAACTCGGTCAGTTTACGTTTCCAATTCGCTCGCAACCCCGGTGCGAGATCAGGTGCAGGGCATCGTGGCAAGCGTTGA 687 0.4905 MSDAYWRYAESQHAPSAIPAKRPRPDYDVSGVHDLASYYPHDADRGRLQVVRDTESLDASYERYLRNAISTYGPGQPTRTIDGGVPSHSVDESHVANIGGVDRRSHVNDKIQELSGGRSDHSLPHGATNTVFVEGLPSNCTRREVAHIFRPFVGYKEVRLVSKESRQPGGDPLLLCFVDFVSPAHAATAMDALHGYKFDELDRNSVSLRFQFARNPGARSGAGHRGKR* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1756 228 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 129 215 IPR000504 GO:0003723
Psa5g1756 228 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 11 228 - -
Psa5g1756 228 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 131 199 IPR000504 GO:0003723
Psa5g1756 228 CDD RRM_RBPMS_like 129 209 - -
Psa5g1756 228 PANTHER PROTEIN MATERNALLY EXPRESSED GENE 5 11 228 - -
Psa5g1756 228 SMART rrm1_1 130 204 IPR000504 GO:0003723
Psa5g1756 228 Gene3D - 126 220 IPR012677 -
Psa5g1756 228 SUPERFAMILY RNA-binding domain, RBD 123 199 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1756 Psa-Chr5 136040788 136046878 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1756 - - gmx:100786188 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1756 5 136040788 136046878 Psa5g1756 5 136040788 136046878 ECH