Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1684 ATGCCAATGGCGACTACTCACTTCAACTTCCAAACTAACTTTCTCCCATCTTCCCCTTCTCCCACTCGCCGCCTTTCTGTACTCTCCTCCAAGACCAAGCTACTACCCTCCCCAACATTCTTCAAAGGACAAATCACTAAACAATTTCTCAAATTCAACTATGCTGCAACACCACCACCACCAACAAAACACCGCGTTATTCGCATGTCGTGGGACGGTTCACTCTCCTCCGTCAAATTAATCATCCAGGGTAAAAATATGGAGCTTAATGATGCGGTGAAGCAGCACATCGAGGACAAAGTGGGGAGAGCAGTTCAGAAGCACAGCTACCTTGTTAGGGAAGTTGATGTCAGGCTATCTACTCGCGGAGGAGGAGAATTTGGCCGAGGGCCGAGAACGCGCAGATGTGAGGTGACTTTATTTACTAAGAGGCACGGGGTTGTGCGGGCTGAGGAACACGCTGAAACTACCTATGGGAGTATAGATTTGGTGTCCTCGATCATTCAGAGAAAGTTGAGAAAGATCAAGGAAAAAGAAACTGATCATGGTCGTCACATGAAGGGATCCAATAGGTTGAAATTTAGGGAGCCTATTTTGCCACTACTGTCGGAGGATGAAGAGGATGAAGTTGAAATTTCCCCACAGAAGGAGGATGAAGAACAACTTATTGAAGAGGTTGTTCGAACAAAATACTTTGACATACCTCCCTTAACTGTGTTTGAAGCAATTGACCAGTTGGAAAATGTTCATCATGACTTCTATGCATTTCGAAATGAAGAAACTGGGGAGATTAATATTATATACAAAAGAAAAGAAGGAGGTTATGGACTCATTATACCCAAAGGAGACTGTGAAGCAGATAAATTGGAGCCTATAGTGCTTGATCTAGCTAAAGAACCCTCTGTGCAAGAATGA 915 0.4404 MPMATTHFNFQTNFLPSSPSPTRRLSVLSSKTKLLPSPTFFKGQITKQFLKFNYAATPPPPTKHRVIRMSWDGSLSSVKLIIQGKNMELNDAVKQHIEDKVGRAVQKHSYLVREVDVRLSTRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEHAETTYGSIDLVSSIIQRKLRKIKEKETDHGRHMKGSNRLKFREPILPLLSEDEEDEVEISPQKEDEEQLIEEVVRTKYFDIPPLTVFEAIDQLENVHHDFYAFRNEETGEINIIYKRKEGGYGLIIPKGDCEADKLEPIVLDLAKEPSVQE* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1684 304 CDD RaiA 79 178 IPR003489 GO:0044238
Psa5g1684 304 Gene3D - 236 285 IPR038416 -
Psa5g1684 304 Hamap Ribosome hibernation promoting factor [hpf]. 78 281 IPR034694 -
Psa5g1684 304 SUPERFAMILY Ribosome binding protein Y (YfiA homologue) 79 185 IPR036567 -
Psa5g1684 304 PANTHER 30S RIBOSOMAL PROTEIN 65 283 - -
Psa5g1684 304 Pfam Sigma 54 modulation protein / S30EA ribosomal protein 81 178 IPR003489 GO:0044238
Psa5g1684 304 Gene3D - 79 183 IPR036567 -
Psa5g1684 304 TIGRFAM yfiA: ribosomal subunit interface protein 79 183 IPR003489 GO:0044238
Psa5g1684 304 Pfam Sigma 54 modulation/S30EA ribosomal protein C terminus 224 277 IPR032528 -
Psa5g1684 304 PANTHER 30S RIBOSOMAL PROTEIN 65 283 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1684 - - mtr:MTR_3g092720 453.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1684 5 131193864 131196381 Psa5g1684 5 131193864 131196381 ECH