Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1677 ATGGATAATTCCACTCAAGAATCCCATCTCCGATCCGATAACAACTCCGTCACCTATGATTCTCCTCATCCTCTTTACGCCATGGCTTTCTCTTCAAACCCCAATCCCCAACACCACCAACGAATCGCCGTCGGTAGCTTCATCGAAGAATACACTAACCGCGTCGATATCCTCTCTTTCAACCCCGATACTCTCTCCATTAAACCTCAACCTTCACTTTCATTCGATCACCCTTATCCACCTACCAAACTCATGTTCCACCCCGCAACCCATTCCTCCCTCCAGAAAACATCCTCCGACCTCCTCGCCACCTCCGGCGACTATCTCCGTCTCTGGGAAGTTCGTGAGAATTCCGTCGAGGCTCTTTCTCTCTTCAACAACAGCAAAACCAGTGAGTTTTGTGCTCCGTTAACCTCCTTCGACTGGAACGAAATTGAGCCGAAACGCATCGGAACTTCCAGTATCGACACTACTTGTACTATCTGGGACATTGAAAGAGGGGTTGTTGAAACTCAGCTTATTGCACACGATAAAGAGGTTTACGATATCGCTTGGGGGGAATCCAGAGTTTTCGCTTCTGTTTCTGCTGATGGGTCTGTTAGGATCTTTGATCTAAGAGACAAAGAGCATTCTACAATTATCTATGAGAGTCCTCAACCAGATACTCCTTTGCTTCGTTTGGCTTGGAACAAGAAGGATTTGAGATACATGGCAACTATTTTGATGGATAGTAATAAAGTTGTCATTTTGGATATTCGATCACCAACCACGCCTGTCGCGGAATTGGAGAGGCATCGTGCTGGTGTTAATGCGATTGCTTGGGCTCCAAGAAGCTCTAAGCATATTTGTTCTGCTGGAGATGATACGCAGGCTCTTATGTGGGAGTTACCTACGGTGGCTGGTCCAAATGGAATTGATCCAATGTCTATGTATTCTTCTGGTTATGAGATTAATCAGCTTCAGTGGTCTGCTGCTCAGCCGGATTGGATTGCAATTGCTTTTGCAAACAAGATGCAGCTTTTGAGGGTTTGA 1032 0.4603 MDNSTQESHLRSDNNSVTYDSPHPLYAMAFSSNPNPQHHQRIAVGSFIEEYTNRVDILSFNPDTLSIKPQPSLSFDHPYPPTKLMFHPATHSSLQKTSSDLLATSGDYLRLWEVRENSVEALSLFNNSKTSEFCAPLTSFDWNEIEPKRIGTSSIDTTCTIWDIERGVVETQLIAHDKEVYDIAWGESRVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKKDLRYMATILMDSNKVVILDIRSPTTPVAELERHRAGVNAIAWAPRSSKHICSAGDDTQALMWELPTVAGPNGIDPMSMYSSGYEINQLQWSAAQPDWIAIAFANKMQLLRV* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1677 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 213 IPR001680 GO:0005515
Psa5g1677 343 SUPERFAMILY WD40 repeat-like 22 302 IPR036322 GO:0005515
Psa5g1677 343 SMART WD40_4 255 295 IPR001680 GO:0005515
Psa5g1677 343 SMART WD40_4 124 163 IPR001680 GO:0005515
Psa5g1677 343 SMART WD40_4 166 204 IPR001680 GO:0005515
Psa5g1677 343 SMART WD40_4 68 113 IPR001680 GO:0005515
Psa5g1677 343 PANTHER PROTEIN TRANSPARENT TESTA GLABRA 1 1 343 IPR031104 -
Psa5g1677 343 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
Psa5g1677 343 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 296 IPR001680 GO:0005515
Psa5g1677 343 Gene3D - 128 342 IPR015943 GO:0005515
Psa5g1677 343 PANTHER WD REPEAT CONTAINING PROTEIN 1 343 IPR045159 -
Psa5g1677 343 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1677 Psa-Chr5 131019620 131023414 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1677 K11805 - cpap:110823444 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1677 5 131019620 131023414 Psa5g1677 5 131019620 131023414 ECH