Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1580 ATGTTGACCCTCTCCAAGTTGAAGAAATCATTCAACACCCCATGCTTCTGCGGATTCCGCAGAATCCACAACAATTCATCTGATCAACCAGGTCTTCGTTTCTGCATCTGGGTCGCTCTCAAATTCGACACTCTCACCAGCAAGCCCTATTACTTGGTTAGTCGCATCCTTATTCGTAAGAACTGGCATTCCATTTACTGGGAAGCTCTTGAGCTTCTCAAGAAAAAAGGGGTTTTAGTCACTTCAGATTCCGTTAGAGCTTTAGTTAGGTCTTATTCTTATTCGGGTCATACCGAAAAAGCTATAGAGTCATTCGGTAAAATGCGCGAATTTGGTGTCATTCCTGATGCTCATATGTATAACACAGTTTTGAGAGATGTGTTGAAGGAAAAGTTATTTGTGCTTGCTTTTGCTTTGTATAATACCATGCTTAAGTCCAATGTTGATCCTAATGACTATACTTATAACATGTTGATTGATGGGTTTTGTAAAAGTGGTAACATTAAGGGTGCACGTGAGATGCTTGATGAAATGCAGAAGGTTAGTATTGTTCCTAGTGTTGTATCGACTACTTCTATTCTTTATGGTTTGTGTCAGGCGAATAATGTAGATGAGGCGCTTATGTTGTTTAATGTTATGAAAGAAAAAGAGTGCCCGCCGGATATGATTTCTTGTAATGTTGTGCTGAATGGGTTTTGTAAGATGGGGAGGTTAGAGGAAGCGCTTTCTTTTGTATGGTTGATAAAGAGAGACGGTTTCTTGCTTAATCAAAATAGCTATAGTTCTCTTATTAATGCGTTATTTAGGGCTAGGAGATATAGTGAAGCACATGCGTGGTATACGAGGATGTTTAAGGAGGGCTTTGCACCTGATGTTGTTTTGTATGCCATTATGATACGTGGTTTGTCGGAGGAGGGCAGAGTTGGTGAAGCTGCTAGGATGTTAGATGAGATGACTAAGATAGGTTTAACTCCTGATGCTTATTGCTACAATGCCATTATTAAAGGTTTGTGTGATACGGGTCTTTTGGATCGAGCGCAGTCTCTTTGTCTTGAGATTTCTGAGTACAATGTTTACACGCACACAATTCTCATATGTGAAATGTGTAAGCAAGGAATGGTTGATAAAGCACAAGAATTATTTAATCGGATGGAGTCGCTTGGATGTGTTCCATCGGTTGTGACCTTCAATGCGCTTATAAATGGACTGTGCAATGCTCATAAACTCGAGGAGGCAAGCCTTTTACTTTACAAGATGGAGATTGGGAAAAGACCGTCGTTAATCTTAAGCCTTTTTCAGGGTTCTGGTCAGGTTTTTGATAGTGCTAGTCTCCAGAAAAAGGTGGAGCAAATGTGTGAGGCCGGAAAATTTTTGGATGCTTACAAATTTCTCACTCAACTCGCTGATAGTGGGGTTGTGCCTGACATTATTACTTACAACACTCTAATTAATGCCTTTTGCGGGGCTTTTAATATTAAAGGTGCTTTCATGCTTTTTGAGGATCTGCAAAAGAAGGGTCTCTCACCCGATACTGTTACTTATGGGACACTTATTAATGGGCTATATAAAGTTGACCGAGAAAAGGATGCCTTAAAGATTTATGAGCGTATGCAGAAGGCTGGCTGTGAACCCACCCTTTCACTTTATAGAGGGCTTATGACATGGTTGTGTAGAAAGAGCAAGGTCTCACTGGCGTTCAGTCTTTATTTGGAATATTTGAAGAGCCTTCCTAGTCGGGACAATGATTCAATCAGTGCGCTGGAGGAATATTTAGTTGGAGGAAAATTGGACCAAGTGATTCGAGGTTTACTTGAACTGGACTTCAGGGCCAGAGATTTTAAATTAGCTCCATATACAATTCTACTTATTGGATTCTGTCAGGTAGGAAGAGTATATGAAGCATTAATTATATTCTCTGTTCTTGACAAGTTCAATATCAAAATCAATGCTACAAGTTGTGTACATTTGATCAAAGGTCTTTGTAAAGAAGGGAAGCTAGATGACGCAGTAAAAATATTTCTTTACACTCTTGACAGAGGTTTCATGTTGAGGCCAATGATTTGTAATCATCTCCTTGTGTTTCTTCTTGTTTCTCGAGATTATAAGGAGTGGGCTATTGATCTTATTGGTAGGATGGAATCTTTTGGATACCGTTTAGATTCAAATGAATATAGCAGGACAGTGTATCTTATAGACCAATACCAAAAACGAAAGAAAAGAAAAAATCATCTCAGAAGAGATTAA 2244 0.3922 MLTLSKLKKSFNTPCFCGFRRIHNNSSDQPGLRFCIWVALKFDTLTSKPYYLVSRILIRKNWHSIYWEALELLKKKGVLVTSDSVRALVRSYSYSGHTEKAIESFGKMREFGVIPDAHMYNTVLRDVLKEKLFVLAFALYNTMLKSNVDPNDYTYNMLIDGFCKSGNIKGAREMLDEMQKVSIVPSVVSTTSILYGLCQANNVDEALMLFNVMKEKECPPDMISCNVVLNGFCKMGRLEEALSFVWLIKRDGFLLNQNSYSSLINALFRARRYSEAHAWYTRMFKEGFAPDVVLYAIMIRGLSEEGRVGEAARMLDEMTKIGLTPDAYCYNAIIKGLCDTGLLDRAQSLCLEISEYNVYTHTILICEMCKQGMVDKAQELFNRMESLGCVPSVVTFNALINGLCNAHKLEEASLLLYKMEIGKRPSLILSLFQGSGQVFDSASLQKKVEQMCEAGKFLDAYKFLTQLADSGVVPDIITYNTLINAFCGAFNIKGAFMLFEDLQKKGLSPDTVTYGTLINGLYKVDREKDALKIYERMQKAGCEPTLSLYRGLMTWLCRKSKVSLAFSLYLEYLKSLPSRDNDSISALEEYLVGGKLDQVIRGLLELDFRARDFKLAPYTILLIGFCQVGRVYEALIIFSVLDKFNIKINATSCVHLIKGLCKEGKLDDAVKIFLYTLDRGFMLRPMICNHLLVFLLVSRDYKEWAIDLIGRMESFGYRLDSNEYSRTVYLIDQYQKRKKRKNHLRRD* 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1580 747 Gene3D Tetratricopeptide repeat domain 607 746 IPR011990 GO:0005515
Psa5g1580 747 Gene3D Tetratricopeptide repeat domain 247 356 IPR011990 GO:0005515
Psa5g1580 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 392 426 IPR002885 -
Psa5g1580 747 SUPERFAMILY HCP-like 194 387 - -
Psa5g1580 747 Pfam PPR repeat 259 288 IPR002885 -
Psa5g1580 747 Pfam PPR repeat 87 113 IPR002885 -
Psa5g1580 747 Pfam PPR repeat 655 675 IPR002885 -
Psa5g1580 747 Pfam PPR repeat 618 641 IPR002885 -
Psa5g1580 747 Pfam PPR repeat family 115 164 IPR002885 -
Psa5g1580 747 Pfam PPR repeat family 474 523 IPR002885 -
Psa5g1580 747 Pfam PPR repeat family 185 234 IPR002885 -
Psa5g1580 747 Pfam PPR repeat family 290 339 IPR002885 -
Psa5g1580 747 Pfam PPR repeat family 357 405 IPR002885 -
Psa5g1580 747 Gene3D Tetratricopeptide repeat domain 432 503 IPR011990 GO:0005515
Psa5g1580 747 Gene3D Tetratricopeptide repeat domain 357 422 IPR011990 GO:0005515
Psa5g1580 747 Gene3D Tetratricopeptide repeat domain 180 246 IPR011990 GO:0005515
Psa5g1580 747 Gene3D Tetratricopeptide repeat domain 504 575 IPR011990 GO:0005515
Psa5g1580 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Psa5g1580 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Psa5g1580 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Psa5g1580 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Psa5g1580 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 510 544 IPR002885 -
Psa5g1580 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 151 185 IPR002885 -
Psa5g1580 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
Psa5g1580 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Psa5g1580 747 Gene3D Tetratricopeptide repeat domain 50 179 IPR011990 GO:0005515
Psa5g1580 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 649 683 IPR002885 -
Psa5g1580 747 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 290 428 - -
Psa5g1580 747 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 171 349 - -
Psa5g1580 747 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 66 285 - -
Psa5g1580 747 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 449 736 - -
Psa5g1580 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Psa5g1580 747 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Psa5g1580 747 TIGRFAM PPR: pentatricopeptide repeat domain 259 292 IPR002885 -
Psa5g1580 747 TIGRFAM PPR: pentatricopeptide repeat domain 394 420 IPR002885 -
Psa5g1580 747 TIGRFAM PPR: pentatricopeptide repeat domain 153 186 IPR002885 -
Psa5g1580 747 TIGRFAM PPR: pentatricopeptide repeat domain 223 256 IPR002885 -
Psa5g1580 747 TIGRFAM PPR: pentatricopeptide repeat domain 512 545 IPR002885 -
Psa5g1580 747 TIGRFAM PPR: pentatricopeptide repeat domain 189 221 IPR002885 -
Psa5g1580 747 TIGRFAM PPR: pentatricopeptide repeat domain 359 393 IPR002885 -
Psa5g1580 747 TIGRFAM PPR: pentatricopeptide repeat domain 477 511 IPR002885 -
Psa5g1580 747 TIGRFAM PPR: pentatricopeptide repeat domain 293 326 IPR002885 -
Psa5g1580 747 TIGRFAM PPR: pentatricopeptide repeat domain 653 675 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1580 224 739 Glycosyltransferase AT1G05670 25.290 8.24e-41 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1580 - - lang:109340115 918.687