Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1538 ATGGCTGAAGATAGCTCACGACGTGGTGGGTTTTCAGCTGGTCTGGCTGTCATATTGAATGGTGAGGATAATAAGAAAAAGTTGCCGAAAACTCGGTTACTTTCCTACTGTGATGATTTTGGTGAACAGTCGGTGGAAAGAACGCTTGAATACGTGTTTGGTCTCCCCAACAGATTTTTAAATTCATTGGATGGTCCAGTTGACAGCAGTTTTATTCATTCTGTCATTAGGAATGTTTTTTCAAGGTATAATGCAAATATTGGTGATTCTTCTAGGGAAAGAGATATGATATGTAGACCAGATGTTGTTGGCCTAGAAGAATCCAGCATATGTGGTGATATTAAAATCATTAAACCACCTTTTCTTATAGAGAGTTTGGAATTGTTCAGTAGTGCAAGGGTTAATACCTGTGTTTGGAAAGGGAAATGGATGTATGAAGTTTTGTTGGAAACATCTGGCATACAGCAGCTTGGTTGGGCCACTCTTTCTTGCCCTTTCACGGACCATAAAGGTGTTGGTGATGCCGATGATTCATATGCCTATGACGGGAGACGAGTTAGCAAGTGGAACAAAGGTGCTGAGACATATGGTCAGTCATGGGTTGTTGGTGATGTCATTGGATGTTGCATAGATTTGGAACAAGATGAAATAATTTTCTACAGGAATGGAAATTCACTTGGGACAGCATTCAGAGGAATTCAAAAAATGGGTCCTGGTTTTGGTTATCACCCAGCAATCTCTCTCTCCGAGGGTGAAAGATGTGAATTGAACTTTGGAGCTCGGCCCTTCAAGTACCCAATTGAAGGCTACCGTCCTCTTCAGGCTCCTCCCTCTAAGAGCTACTTCGTCACACGATTGCTTCAGTGCTGGTCAAGGCTGTTGGACATGCATTCAGTGGAACGAGCTGATCATTCATTAGCTCAGAAACTGAGAAGAGTGAAGAGGTTTGTTTCATTGGAAGAAATTTTTCGTCCTGTCTCTTATGCTATTTGTGAGGAATTATTCTCTATACTTGAAGAAAATGTTGGACACACAGAGTATATGGTTTGGGGTCCAGTGTTGTCCTTCATGTTTGAAGTTTTTGAGTTGCATGCACCCCATGATTATTCAAGTTTGGATAAAGTAGTTGAAGTACTGCTACAATTTCAAGGATCACATGTGCTGTTTGAAAACATCCTAAACGCACTTTCATGTGGTTGTAAAACGGCTCAATTAGTTCTAACTGAATGTCCTTACTCTGGGTCATATCCTTACCTTGCCCTGGCATGTCATCTACTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAATCGCCAGATTTTGAATTTTTGTTTGAAGGTTTAATGTCGCGAAAAACTCCAAACAAGCAGGATCTTGACTCCATGATACCCACTGTTTGGTGGCCCGGTTCCTGTGAAGATGCTTGTTGTGAAGGTAACATGATGTTGGCAACCACAGCTTTGTCTGAATCAATCAGCAAGATTGAGGAGAAGCATCGGGACCTCTGTCGCTTAGTTATACAATTTATACCTCCTATGGCACCTCCCCAATTACCTGGAGCAGTATTTAGGACATTTTTACAAAACCTTCTATTGAAGAACAGAGGGGCAGAGAGAAATGTCCCACCACCTGGAGTTTCTAGCAACTCAGTTTTTATTTCAATTTATACAGTTGTGCTCCATTTTTTATCAGAAGGGTTTGCATTGGGTGATATCTGTGGCTGGTTAAAGAGCTACAAATCAGATGTTGGTTTCCTTCACAGAGGTGGTCAACAAAGTTTTCCCATACACTTGTTTCTAAGAAATGACCCTCATAGAACTGATATTTCCAGGCTTGGGGGATCCTATACCCATTTATCAAAGCTACACTCCGTAATTGATCATGAAAGGGAAGTAGTTCAATGGGATGAAGGTTGCATGGATAATGAAGAAATCAGAGTGACACATTCAACCAAACAGAAGCCGTGCTGTTGTTCAAGTTATGATTCTGAATTTGCAAGGAGTTCAAAGGTTCCAGCTAAATACCTGGCCAAAGGGTCTCGGGGCCATTGTAGCTCTATTCCCGAAAGACCTGCTCATGTTACTGCTGAATGCAGTGATGGGAGTTTGAATGGTGAGATAGCAGATAAACCCAGTTCCAGTGATCAATCTGAACCCGAGTATGGTTACCGCCAAGTGCACCATCTGAAGTCTGTCCCAAAGGATACTGATATGTGTATGGATATTCTACAAGAAGAAGAGCTGCTTGATGCTTTGTTATGGCTGTATCAATTTGGTCTTGCTCCAAATTTTAAGCAGGCATCGTATTACATGACTCATCAAGCACAATCAATTTCCCTTTTGGAGGAAACTGATAAGCAAATAAGAGACCGAGCTTGTGGTGAAAAATTGAAGCATTTGAAAGAAGCTCGTAACGAGTATAGAGAAGAGGTTATTGACTGTGTTAGGCATTGTGCTTGGTATCGTATCTCTTTGTTATCTCGATGGAAGCAGCGGGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTGCTACTGGTTCTTAGCAATATGGATTCTGTGTTTATCTACACCCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTGTTGCGGAAAAGTGATCCTCCATTTGTTCCATCCACCATTTTGATCAAGCATGGACTTGTTTCATTTGTCACTTTTGTAGTTACTCATTTCAATGATCCAAGGATATCAAGTGCGGATCTTAGGGATCTTCTTCTCCAGTCTATATCCGCCCTGGTGCAGTACAGGGAGTATTTTGCAGTTTTTGAGAGCAACGAGGCAGCCAACCAAAGGCTTCCAAAAGCTCTGTTATCAGCATTTGATAACAGATCTTGGATCCCGGTGACGAACATACTTCTGCGATTATGCAAGGGTTCTGGTTTTAGTTTTTCAAAGAATGGAGAATCATCTTCATCATCAATTCTTTTCCAAAGGTTGCTAAAAGAAGCTTGCATAAATGATGAAGGCTTGTTTTCATCTTTCCTAAACCGTCTATTTAATATACTTAGCTGGAGTATGACAGAGTTTTCAGTTTCTGTTCGAGAAATGCAAGAAAAGTACCAGGTAATGGAGTTTCAGCAAAAGAAATGTGGTGTCATATTTGATCTCTCATGTAATCTTGCAAGAATTTTGGAGTTTTGTACTCATGAGATTCCTCAAGCATTCCTGTCTGGACCAGAAACAAACCTAAGGAGGTTAACTGAGTTGGTTGTATTCATCTTGAATAACATTACTTCTTCAGCCGATGCTGAATTCTTTGACTTGTCCCTTAGACGGCATAACCAATCTTCAGAGAAAGTGAATCGAGGCATGGTATTGGCGCCTCTCGCAGGGATCATGTTAAATTTATTGGATGCTGCTAAGTTGGCAGAGTGTCGAGAAAACAGTGATCTTGTGGATGTTTTTCTAAGCATGGATTGTCCGGATACAGTTCTTTATGGTTTCCAATATCTTGTGAATTATAACTGGGATGAATCATGTCGGGGAGAGGCATACATGGGAAAACATAAGCAGCTCGAAAATTTTCTGACCCTCCTTGCTTGCCGTGCTATGTCTGAACGTGATGAAGTGAACAGTTTTGTAGATTCAGACCTTGATGATAACTTATGCTGCATATGTTACGCATGTGAAGCAGATACCCAGATTGCACCTTGTTCACATAGGTCTTGCTATGGCTGTATAACTAGGCATCTTTTGAACTGTCAAAGATGTTTCTTTTGCAATGCTACAGTGACAGATGTTAGGAGAATTAATGAGAAGACAGGCTAG 3801 0.4109 MAEDSSRRGGFSAGLAVILNGEDNKKKLPKTRLLSYCDDFGEQSVERTLEYVFGLPNRFLNSLDGPVDSSFIHSVIRNVFSRYNANIGDSSRERDMICRPDVVGLEESSICGDIKIIKPPFLIESLELFSSARVNTCVWKGKWMYEVLLETSGIQQLGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKGAETYGQSWVVGDVIGCCIDLEQDEIIFYRNGNSLGTAFRGIQKMGPGFGYHPAISLSEGERCELNFGARPFKYPIEGYRPLQAPPSKSYFVTRLLQCWSRLLDMHSVERADHSLAQKLRRVKRFVSLEEIFRPVSYAICEELFSILEENVGHTEYMVWGPVLSFMFEVFELHAPHDYSSLDKVVEVLLQFQGSHVLFENILNALSCGCKTAQLVLTECPYSGSYPYLALACHLLRREELMVLWWKSPDFEFLFEGLMSRKTPNKQDLDSMIPTVWWPGSCEDACCEGNMMLATTALSESISKIEEKHRDLCRLVIQFIPPMAPPQLPGAVFRTFLQNLLLKNRGAERNVPPPGVSSNSVFISIYTVVLHFLSEGFALGDICGWLKSYKSDVGFLHRGGQQSFPIHLFLRNDPHRTDISRLGGSYTHLSKLHSVIDHEREVVQWDEGCMDNEEIRVTHSTKQKPCCCSSYDSEFARSSKVPAKYLAKGSRGHCSSIPERPAHVTAECSDGSLNGEIADKPSSSDQSEPEYGYRQVHHLKSVPKDTDMCMDILQEEELLDALLWLYQFGLAPNFKQASYYMTHQAQSISLLEETDKQIRDRACGEKLKHLKEARNEYREEVIDCVRHCAWYRISLLSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYTPEYYLEALVDCFHVLRKSDPPFVPSTILIKHGLVSFVTFVVTHFNDPRISSADLRDLLLQSISALVQYREYFAVFESNEAANQRLPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSILFQRLLKEACINDEGLFSSFLNRLFNILSWSMTEFSVSVREMQEKYQVMEFQQKKCGVIFDLSCNLARILEFCTHEIPQAFLSGPETNLRRLTELVVFILNNITSSADAEFFDLSLRRHNQSSEKVNRGMVLAPLAGIMLNLLDAAKLAECRENSDLVDVFLSMDCPDTVLYGFQYLVNYNWDESCRGEAYMGKHKQLENFLTLLACRAMSERDEVNSFVDSDLDDNLCCICYACEADTQIAPCSHRSCYGCITRHLLNCQRCFFCNATVTDVRRINEKTG* 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1538 1266 CDD RING-HC_RNF123 1212 1252 - -
Psa5g1538 1266 ProSiteProfiles B30.2/SPRY domain profile. 65 263 IPR001870 -
Psa5g1538 1266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1208 1263 IPR013083 -
Psa5g1538 1266 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 40 1265 IPR045129 GO:0004842
Psa5g1538 1266 Pfam Ubiquitin elongating factor core 720 951 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Psa5g1538 1266 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 40 1265 - -
Psa5g1538 1266 Gene3D - 122 289 IPR043136 -
Psa5g1538 1266 SUPERFAMILY RING/U-box 1208 1258 - -
Psa5g1538 1266 Pfam SPRY domain 142 260 IPR003877 GO:0005515
Psa5g1538 1266 ProSiteProfiles Zinc finger RING-type profile. 1214 1248 IPR001841 -
Psa5g1538 1266 SMART SPRY_3 140 262 IPR003877 GO:0005515
Psa5g1538 1266 SUPERFAMILY Concanavalin A-like lectins/glucanases 127 275 IPR013320 -
Psa5g1538 1266 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 131 IPR045737 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1538 K12169 - gmx:100800617 2225.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1538 5 119211034 119228444 Psa5g1538 5 119211034 119228444 ECH