Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1486 ATGGCGACAAAAGCTTTATCCTTCACCTTATCACTCAACGATCTCTTCTCTTCCAAGCCGCCACATACCGCTTCAAACCTCTCCGTTTTCTCTGTCAGATGTTCCGCCGGTAATGGAGAGAGGCCTTGGAAGAATTCAGATGCTAGGCTTGTGCTTGAAGATGGTTCTATTTGGAAAGCTAAATCGTTTGGTGCTTCAGGGACACAAGTTGGTGAAGTTGTTTTCAATACATCATTGACAGGGTATCAAGAGATCTTAACTGATCCTAGTTATGCTGGACAGTTTGTTCTGATGACTAATCCGCAAATTGGGAATACCGGCGTAAATTTTGATGATGAAGAGTCAGCGCAGTGCTTTCTTTCTGGTCTAGTAATTAGAAGTTTGAGTATCAGTACCTCGAACTGGAGATGTGTGAAAGATCTTGGAGATTACCTGACAGAAAGGAATGTCATGGGAATTTATGATGTTGACACACGGGCAATCACACGCAGATTAAGGGAGGATGGAAGTCTTATTGGTGTTTTGAGCACCGACAATTCCAAAACAGATGAGGAATTAATTCACATGTCTAAATCATGGGACATTGTTGGTGTTGATCTAATAAGTGGAGTATCGTGCAAGTCTCCATATGAATGGATTGATAGAACAAAGGAAGGATGGGAATTTAGCACCGGCGAAGGGCCTAGAGACACTTTCCATGTAGTTGCTTACGATTTTGGAATCAAGCATAATATACTTAGGCGCCTTGCATCGTATGGCTGTAAAATCACTGTTGTGCCATCTACATGGCCAGCATCCGAAACTTTGAAGTTAAATCCAGATGGCGTGCTTTTCAGCAATGGCCCCGGAGATCCATCTGCCGTTCCTTATGCTGTTGAGACCGTGAAGAGTATTATTGGAAAGGTGCCTGTTTTCGGAATTTGCATGGGACATCAATTGCTAGGCCAGGCTTTAGGAGGTACAACCTACAAGATGAAGTTTGGTCACCATGGAGGAAATCATCCCGTTCGCAACCTCCGAACTGGCCGCGTTGAAATTAGTTCCCAGAACCACAACTACGCGGTCGATCCTGCCACACTTCCGGAAGGTGTAGAGGTTACTCATATCAATCTTAACGACAGTAGTTGTGCTGGTCTTGCTTTCCCCGCTCAAAAGCTCGTGTCTCTTCAGTACCACCCTGAAGCATCCCCTGGACCTCATGATTCCGACAACGCTTTTGGGGAGTTCATAGAGCTGATAAAGCACGGAAAAAACAAAACACCGAGCAAAAGCGTGCATGAACTACAATCAGTGTAA 1296 0.446 MATKALSFTLSLNDLFSSKPPHTASNLSVFSVRCSAGNGERPWKNSDARLVLEDGSIWKAKSFGASGTQVGEVVFNTSLTGYQEILTDPSYAGQFVLMTNPQIGNTGVNFDDEESAQCFLSGLVIRSLSISTSNWRCVKDLGDYLTERNVMGIYDVDTRAITRRLREDGSLIGVLSTDNSKTDEELIHMSKSWDIVGVDLISGVSCKSPYEWIDRTKEGWEFSTGEGPRDTFHVVAYDFGIKHNILRRLASYGCKITVVPSTWPASETLKLNPDGVLFSNGPGDPSAVPYAVETVKSIIGKVPVFGICMGHQLLGQALGGTTYKMKFGHHGGNHPVRNLRTGRVEISSQNHNYAVDPATLPEGVEVTHINLNDSSCAGLAFPAQKLVSLQYHPEASPGPHDSDNAFGEFIELIKHGKNKTPSKSVHELQSV* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1486 431 Pfam Carbamoyl-phosphate synthase small chain, CPSase domain 50 174 IPR002474 -
Psa5g1486 431 PANTHER CARBAMOYL-PHOSPHATE SYNTHASE ARGININE-SPECIFIC SMALL CHAIN 28 415 - -
Psa5g1486 431 Gene3D - 195 417 IPR029062 -
Psa5g1486 431 Gene3D - 46 194 IPR036480 -
Psa5g1486 431 SUPERFAMILY Class I glutamine amidotransferase-like 226 415 IPR029062 -
Psa5g1486 431 SMART CPSase_sm_chain_2 46 176 IPR002474 -
Psa5g1486 431 TIGRFAM CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 48 414 IPR006274 GO:0004088|GO:0006207|GO:0006541
Psa5g1486 431 PRINTS Anthranilate synthase component II signature 276 285 - -
Psa5g1486 431 PRINTS Anthranilate synthase component II signature 303 314 - -
Psa5g1486 431 PRINTS Anthranilate synthase component II signature 388 401 - -
Psa5g1486 431 PANTHER CARBAMOYLTRANSFERASE FAMILY MEMBER 28 415 - -
Psa5g1486 431 PRINTS Glutamine amidotransferase superfamily signature 276 285 - -
Psa5g1486 431 PRINTS Glutamine amidotransferase superfamily signature 303 314 - -
Psa5g1486 431 PRINTS Glutamine amidotransferase superfamily signature 388 401 - -
Psa5g1486 431 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 233 419 - -
Psa5g1486 431 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 234 248 - -
Psa5g1486 431 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 273 287 - -
Psa5g1486 431 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 303 319 - -
Psa5g1486 431 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 320 337 - -
Psa5g1486 431 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 345 356 - -
Psa5g1486 431 CDD GATase1_CPSase 234 410 IPR035686 -
Psa5g1486 431 Hamap Carbamoyl-phosphate synthase small chain [carA]. 46 417 IPR006274 GO:0004088|GO:0006207|GO:0006541
Psa5g1486 431 SUPERFAMILY Carbamoyl phosphate synthetase, small subunit N-terminal domain 47 191 IPR036480 -
Psa5g1486 431 Pfam Glutamine amidotransferase class-I 237 411 IPR017926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1486 Psa-Chr5 114329677 114333231 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1486 K01956 - gmx:100806168 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1486 5 114329677 114333231 Psa5g1486 5 114329677 114333231 ECH