Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1467 ATGCTGATCTCTGATGAAGGAGATAATGGTGTGTTCTTGGATGCATTGGATTGTTTTTCACCTTCTCAAGACTCTCTTTTGACAAGCAAATGTTTTGGGTTTGAGTTTTGGCTTAGTGAGCCTCTTAGTGTGAGGGAAAGAAAGGGAAATTTCCTACAAGAGATGGGTTTTGTTGATACTTCTTCTGAGTTTTGCTCTGAAAACAAAATTGTGCATTGCGACGAGAGGATAATGGATTGCAGTGAAGCAGTATCGAATGATTGCGTTTTGTCTTCAATGGAGGAAGCCTCTTCTGAGGTTGAGTCCAGAGATGATGATGATGATGAAAAAACCGATGCAAATTTACAAGGAGAGGAATTACATGGGCTAAGAAATAGAGAAGCTGAGATTGTAGAGGGATTTCAAGTTATTGATATTGGTAAAAAGAAAAAGAGAAACTGGTGGAGGCAATTTGTTAACAGTGGGAAGCTAGCTGGAGGGATAGTTAGATCAAAATTTAGTAATGCGAGTACGGATGAAACTTGCCGAATCAATGTAAGGCACAATAAGAAAAGCTGGAATCATGAGTCTAGTGCTGTGTATGGTGGACAAAAGATTAGAGCACACAAAGGTCTAATTTGGACTATGAAGTTTAGTCCTAGGGGCCAGTATCTCGCAACTGGAGGCGAAGATGGTGTTGTTCGTATATGGCATGTTTCATCGCTGAATGCGTCTAGTATTTGTTATGCTAAAGAAGTTAGCGCTGTTAGCAAATTGAAACATGGCGTGTCTTTTTCTTCGAAGAAATGTTGTCAATCCCCCGTTGTTGTTCCAAGTAAGATTCTCAAAATTGAGGAGTCCCCGCTTCAAGAACTATATGGTCATTCCAGTGATGTGGTGGATTTGGCTTGGTCTGATTCAGATACGCTCCTTTCCTCGTCTATGGATAAAACAGTTCGCATGTGGAAAATTGGTTATAATCAATGTTTAAAAGTTTTCCATCACAAAGATTATGTGACATGCATTCAATTCAACCCGGTTGATGAAAATTACTTCATAAGTGGCTCCATAGATGGTAAAGTCCGAATATGGGGAATACATGAAGAGCGAGTTGTTGACTGGGCCGACACACGAGATGTCATAAGTGCTATAAGTTATCAGCCAGATGGGAAGGGGTTTGTAGTCGGTTCCCTTTGTGGTATTTGCCGCTTTTATGTATCTTCAGGGAAACAATTTGTGCATAAGTCGAAGATTCGTGTCAATGGAAAGAAGAAGAGATCATCTAGCAACAAGATTACTGACATTCAGTTTTCTCATAAAAACCATCGGAGAGTAATGATCACATCACGAGATTCCAAAGTTAGAATATTCGAAGATGCTGAACTTGTTCAGACATATAAAGGTCTTCTAATGTCAGGAAGTCAGACGTCAAGCGGAAATCACATAATTTCAGTTGGCGAAGACTCTCGTGTGTATATTTGGAACTTCAACGACTCGGGAAATTATTTTTCGAAACAGAGAAAAACAGTTAGTTCCCATGAGCACTTTCGCTCCAAGGGTGTTACTGTCGCAATACCTTGGTCAGGCATGACATCAGAAAGAAGCTGCTCTTTCAGCGACTTTGTCAACTATTCTTCTGAAAAGCAACGCGAATTAGTGGCTGCTCCCAGTTTTAGAGAGTCGGAACGTTTTTCTTTTGGGAGTTGGTTCTCCATTGATGGTTCGTGGCGACGTTCTATGACATGGCCCGAAGAGAAACTTCCCAGTTGGGATTCACCTCTTTCGGAAATTGAATTTGATCATGAGGAGCTATCTTTTAAAGATCTATGGCATGAGAATCGTGTCCCAGACACATGGGGACTCTCGGTTGTTGCAGCCGGTCTTGATGGAACCATCAAGACATTTCACAACTTTGGATTTCCTGTTAGGCTTTAG 1914 0.4096 MLISDEGDNGVFLDALDCFSPSQDSLLTSKCFGFEFWLSEPLSVRERKGNFLQEMGFVDTSSEFCSENKIVHCDERIMDCSEAVSNDCVLSSMEEASSEVESRDDDDDEKTDANLQGEELHGLRNREAEIVEGFQVIDIGKKKKRNWWRQFVNSGKLAGGIVRSKFSNASTDETCRINVRHNKKSWNHESSAVYGGQKIRAHKGLIWTMKFSPRGQYLATGGEDGVVRIWHVSSLNASSICYAKEVSAVSKLKHGVSFSSKKCCQSPVVVPSKILKIEESPLQELYGHSSDVVDLAWSDSDTLLSSSMDKTVRMWKIGYNQCLKVFHHKDYVTCIQFNPVDENYFISGSIDGKVRIWGIHEERVVDWADTRDVISAISYQPDGKGFVVGSLCGICRFYVSSGKQFVHKSKIRVNGKKKRSSSNKITDIQFSHKNHRRVMITSRDSKVRIFEDAELVQTYKGLLMSGSQTSSGNHIISVGEDSRVYIWNFNDSGNYFSKQRKTVSSHEHFRSKGVTVAIPWSGMTSERSCSFSDFVNYSSEKQRELVAAPSFRESERFSFGSWFSIDGSWRRSMTWPEEKLPSWDSPLSEIEFDHEELSFKDLWHENRVPDTWGLSVVAAGLDGTIKTFHNFGFPVRL* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1467 637 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 325 IPR001680 GO:0005515
Psa5g1467 637 ProSiteProfiles LIS1 homology (LisH) motif profile. 50 72 IPR006594 GO:0005515
Psa5g1467 637 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 1 637 - -
Psa5g1467 637 SUPERFAMILY WD40 repeat-like 198 491 IPR036322 GO:0005515
Psa5g1467 637 ProSiteProfiles Trp-Asp (WD) repeats profile. 199 240 IPR001680 GO:0005515
Psa5g1467 637 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 325 357 - -
Psa5g1467 637 Gene3D - 182 523 IPR015943 GO:0005515
Psa5g1467 637 SMART WD40_4 452 488 IPR001680 GO:0005515
Psa5g1467 637 SMART WD40_4 319 358 IPR001680 GO:0005515
Psa5g1467 637 SMART WD40_4 360 399 IPR001680 GO:0005515
Psa5g1467 637 SMART WD40_4 278 316 IPR001680 GO:0005515
Psa5g1467 637 SMART WD40_4 414 451 IPR001680 GO:0005515
Psa5g1467 637 SMART WD40_4 192 231 IPR001680 GO:0005515
Psa5g1467 637 PRINTS G protein beta WD-40 repeat signature 218 232 IPR020472 -
Psa5g1467 637 PRINTS G protein beta WD-40 repeat signature 303 317 IPR020472 -
Psa5g1467 637 PRINTS G protein beta WD-40 repeat signature 345 359 IPR020472 -
Psa5g1467 637 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 199 234 - -
Psa5g1467 637 ProSiteProfiles Trp-Asp (WD) repeats profile. 325 367 IPR001680 GO:0005515
Psa5g1467 637 PANTHER WD REPEAT DOMAIN 44 1 637 IPR040324 -
Psa5g1467 637 Pfam WD domain, G-beta repeat 199 230 IPR001680 GO:0005515
Psa5g1467 637 Pfam WD domain, G-beta repeat 280 316 IPR001680 GO:0005515
Psa5g1467 637 Pfam WD domain, G-beta repeat 321 357 IPR001680 GO:0005515
Psa5g1467 637 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 285 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1467 Psa-Chr5 112891908 112894424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1467 193 497 Miscellaneous Gene Families AT5G08390 20.968 7.13e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1467 K20241 - gmx:100780979 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1467 5 112891908 112894424 Psa5g1467 5 112891908 112894424 ECH