Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1436 ATGATGAAGAACTCCACCACCATCCTCACCTACATCAAATCTCGAATCACTCCTCTTCTCGTCGCCGACCGACGGAAACCTAATCTCACCGGTCTCCATCCAGGCCGCCGCTTTAACTCCACCACTGCCGCCAATCCTTCCGTTCACGATCAGGATATAGATTTTCCTGGAGGAAATGTCAAATTCGTTCCTCATATGAGGTTTTTATCTGAATCAACGCAAGAGAGAATCCCCTGTTACCGTGTTCTTGATGACAATGGGGACACAATTTTGGGGACTCAGTCTGTGCAGGTTAGTGAGGATGTTGCTGTTAAAATGTATAATAACATGGTTGCACTTCAAACTATGGACACTATCTTCTATGAAGCACAAAGACAAGGAAGAATCTCGTTTTATGTAACGGCGAATGGGGAAGAGGCTATCAACATTGCATCTGCTGCAGCTCTTTCCATGGATGATGTTATTTTCCCTCAGTATAGGGAACAGGGAGTCTTGTTATGGCGTGGTTTCACTTTGCAAGATTTTGCAAATCAATGTTTTTCCAATAAATTTGATAATGGGAAAGGAAGGCAGATGCCAGCCCATTACGGGTCTAACAAGCACAACTACGTGACTGTAGCATCAACCATTGCTACGCAAATTCCCCATGCTGTTGGAGCTGCATATTCCTTAAAGATGGACAAAAAGGATGCGTGTGCCATAACTTACTTTGGAGATGGCGGTTCAAGTGAGGGAGATTTCCATGCCGGATTAAATTTTGCAGCTGTAATGGAGGCGCCAGTCATTTTTATATGCCGTAATAATGGATGGGCTATCAGTACCCCTACATCAGATCAGTTTCGAAGTGATGGTGTTGTTGTAAAAGGACAAGCTTATGGAGTTCGTAGTATTCGTGTAGATGGGAATGATGCTCTGGCCATCTATAGTGCTGTTCAAGCTGCTCGGCAAATGGCAGTTAGCGAAAAGAGACCAATTTTGATAGAAGCTCTTACTTATAGAGCAGGACACCACTCCACATCAGATGACTCTACCAAGTATCGTCCTGCCAAAGAGATTGATTGGTGGAGATCGACACGTGATCCTGTGGCGAGATTTAGAAAGTGGATAGAAAGGAATGGTTGGTGGAATGACATTGCCGAGTCTGAGCTTCGAAACAGTTTGAGACAGCAGCTTCTTCAGACGATTCAAGTTGCTGAGAGTGCAGAAAAACCTCCCCTTGCAGACATGTTTACTGACGTTTATGACCTTTCGCCGTCCAATCTCCTTGAACAAGAGAAATGGCTGAAGGAGACCGTAAAAAAACATCCACATGAGTACCCAACAAATATTCCCATGTAG 1338 0.4432 MMKNSTTILTYIKSRITPLLVADRRKPNLTGLHPGRRFNSTTAANPSVHDQDIDFPGGNVKFVPHMRFLSESTQERIPCYRVLDDNGDTILGTQSVQVSEDVAVKMYNNMVALQTMDTIFYEAQRQGRISFYVTANGEEAINIASAAALSMDDVIFPQYREQGVLLWRGFTLQDFANQCFSNKFDNGKGRQMPAHYGSNKHNYVTVASTIATQIPHAVGAAYSLKMDKKDACAITYFGDGGSSEGDFHAGLNFAAVMEAPVIFICRNNGWAISTPTSDQFRSDGVVVKGQAYGVRSIRVDGNDALAIYSAVQAARQMAVSEKRPILIEALTYRAGHHSTSDDSTKYRPAKEIDWWRSTRDPVARFRKWIERNGWWNDIAESELRNSLRQQLLQTIQVAESAEKPPLADMFTDVYDLSPSNLLEQEKWLKETVKKHPHEYPTNIPM* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1436 445 Pfam Dehydrogenase E1 component 109 405 IPR001017 GO:0016624
Psa5g1436 445 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 36 445 - -
Psa5g1436 445 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 79 440 IPR029061 -
Psa5g1436 445 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 36 445 - -
Psa5g1436 445 Gene3D - 48 443 - -
Psa5g1436 445 CDD TPP_E1_PDC_ADC_BCADC 106 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1436 Psa-Chr5 111328671 111331890 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1436 51 283 Acyl Lipid Metabolism Gene Families AT5G09300 78.970 2.76e-138 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1436 K00166 - gmx:100779198 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1436 5 111328671 111331890 Psa5g1436 5 111328671 111331890 ECH