Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1415 ATGGCTGGCCGCAGCGTCACCGTCCTTAACGTGGCGGAGAAGCCGTCGGTAGCGAAAGCGGTCGCCCAAATACTTTCAAGGAACCCAGGGATTCGAGGGAGAGACGGTCGTTCTCGTTACAACAAGATCTTCGAGTTCGACTACACCATTCGCGACCAACCCTGTAAAATGCTCTTCACCTCCGTCATTGGCCATCTCATGGAGCTCGAATTCGATGCGCGTTACCGCAAATGGCACTCTTGCGATCCCGCCGATCTCTTCCAGGCTCCTGTCCATAAATCGGTTCCCGAGGACAAAAAGGATATCAAGAGGACACTAGAGGAAGAAGCTAGGCGGTGTCAGTGGCTTGTTTTGTGGCTCGATTGCGATAGGGAAGGTGAGAATATTGCGTTTGAAGTTGTAGACGTATGTACTGCAGTAAATCCTCATCTCACTATCAAGAGGGCTCGATTTTCTGCATTGATCGCCAGCGAAATCTATCAGTCCGTTCAAAATCTTGTCGAGCCAAATAAGTGGTTTGCTGATGCTGTGGATGCTAGGCAGGAAATTGATCTTCGTATAGGCGCTTCATTCACCAGATTTCAGACCATGTTAATGAAAGATGCTTTTAACATAGATACTGTTACAGATGGCAGAAATACTGTCTTGAGTTATGGCCCTTGCCAGTTTCCTACGCTTGGATTTGTTGTGGAAAGATATTGGGAGATACAAGCACATGAACCAGAAGAGTTTTGGTCAATCAATTGCTCTCATAGATCAGATGAAGGCACTGCTAATTTCAGTTGGGGACGCGGGCATTTGTTTGATTATACATGTGCTGTCATAATATATGAGATGTGCATCGAAGAACCAACTGCAACGGTGACAAATGTTAGACAACAAGAGAAGCTTAAGTATCCTCCCCATCCTCTGAGTACTATTGAGCTTGAGAAACGAGCTTCACGATACTTTCGGATGAGTTCTGAGCACACAATGAAGGTGGCAGAAGAGCTTTATCAAGGTGGTTTCATCAGTTATCCTCGTACTGAAACTGATAATTTTTCTTCAAGGACTGATTTGCACGCAATTGTGCAAGAACAACAAGCACATCCTGAATGGGGAATATACGCTCAACGGTTGTTAAACCCTGAGACTGGACTTTGGAGAAATCCTAGAGGTGGTGGTCACGACGACAAGGCCCATCCCCCCATTCATCCGACTAAATTTTCTGCTGGAGAATCAGGATGGAGCCAAAACCATCGTAATATATATGAGTTGGTTGTTCGCCACTATCTGGCATGTGTCTCAAAGCCGGCTGTAGGAGCTGAAACCACAGTGGAGATTGATATTGCTGGGGAACTGTTTTCTGCATGTGGGAGGGTAATTTTAGAGAAAAACTACTTGGATGTCTATCGCTTTGAATCTTGGGGTGGATCAGTGATTCCAACATATACTATTGACCAACAGTTCATTCCAACAACATTGACCCTTGATCCAGGAGTAACCAGACCACCTCCTCTTCTTAGTGAAGCGGATTTGCTGAGTTGTATGGACAAGGAGGGCATTGGTACGGATGCTACAATGCATGATCACATCAAGAAGCTGCTTGAACGATTTTATGCAACTAAGGATGCTAGCATGCGTTTCACACCAACTAATTTGGGCGAGGCACTTGTTATGGGATACGATGACATGGGGTATAAACTATGGAAACCATATCTGAGAGCAGTTATGGAACGTGACATGAAATTGGTCGGTGAAGGGAATAAAAGCAAAGGTGAAGTCCTGGATACTAGCTTGCAGCAGATGAAAGCTTGTTTCTTAGATGCAAGATTAAATAAAGTGAAACTTTTAGAAGCCATGGCAATATTTTTCGAAAGATCAAATAGAGTTGGCAGTGAGCATCAAAATACAACCGAGGAAGTTGTTCGGCGGTGTGGACTTTGCCAAGAATCAGATATGGTGCTAAAGAAAAATCGAGATGGCAAATTTATGGTTGGATGCTTGGGTTATCCTCAGTGTAGAAATGTTGTCTGGCTCCCTGGATCAATATCAGAAGCGGTTGTGACCACCAATACTTGCAACAATTGCACTCCTGGTCCTGTTTTCTTAATTCAATTCAAGTTTCGGCAGCTGGAAATACCACCAAGCTACAATGTCAACCATTTGGGTTGCATTGGTGGCTGTGACGAGATTCTTATACAGTTGACAGAAATATGTGGCACTGGCCCTCGCATGCCAGCAAGAGCTCGAGGACCTACTCCAGCAACCAGCAACGCCCATCCTACTCCAGCAACCAACAACGCCAATCATACCAACCCAAGGCAGTCAGCTTGTTTGCACTGTCAAGAAACAGGGCACTCTTCTAATGATTGTCCTTCACAAACTCGACGCTCCAGGAATGCCCAACATCCTGAAACGAACCAACAAAGTGGAGAATCATCTGTTTCATGTAGCTCATGTGGAGCACCAGGTGTTTTGCGAACTGCAAATACAGCAAATAACAGGGGCAGGAAGTTCTACACATGTCAATCACAGGAGTGCACCTTCTTTGTATGGGAGGATAGCATCAACAATGGCACTGGAGGAAGAGGCTCTGCACGTTCAAATAATGTTCCAACATCCACCCGTGGTCGAAATGGTGGTCGTGGACCTCGTGGTAGGGGTCGGAGTGGATCTAATTCTTCTAGTGGGACATTTGTGACAGCCACCGGGGATCCTATTTCTGGTAGAAGGTGCTTTACCTGTGGTGATCCATCCCACTTTGCTAACGTCTGCCCCAATCGTGGAGTCTGA 2775 0.4569 MAGRSVTVLNVAEKPSVAKAVAQILSRNPGIRGRDGRSRYNKIFEFDYTIRDQPCKMLFTSVIGHLMELEFDARYRKWHSCDPADLFQAPVHKSVPEDKKDIKRTLEEEARRCQWLVLWLDCDREGENIAFEVVDVCTAVNPHLTIKRARFSALIASEIYQSVQNLVEPNKWFADAVDARQEIDLRIGASFTRFQTMLMKDAFNIDTVTDGRNTVLSYGPCQFPTLGFVVERYWEIQAHEPEEFWSINCSHRSDEGTANFSWGRGHLFDYTCAVIIYEMCIEEPTATVTNVRQQEKLKYPPHPLSTIELEKRASRYFRMSSEHTMKVAEELYQGGFISYPRTETDNFSSRTDLHAIVQEQQAHPEWGIYAQRLLNPETGLWRNPRGGGHDDKAHPPIHPTKFSAGESGWSQNHRNIYELVVRHYLACVSKPAVGAETTVEIDIAGELFSACGRVILEKNYLDVYRFESWGGSVIPTYTIDQQFIPTTLTLDPGVTRPPPLLSEADLLSCMDKEGIGTDATMHDHIKKLLERFYATKDASMRFTPTNLGEALVMGYDDMGYKLWKPYLRAVMERDMKLVGEGNKSKGEVLDTSLQQMKACFLDARLNKVKLLEAMAIFFERSNRVGSEHQNTTEEVVRRCGLCQESDMVLKKNRDGKFMVGCLGYPQCRNVVWLPGSISEAVVTTNTCNNCTPGPVFLIQFKFRQLEIPPSYNVNHLGCIGGCDEILIQLTEICGTGPRMPARARGPTPATSNAHPTPATNNANHTNPRQSACLHCQETGHSSNDCPSQTRRSRNAQHPETNQQSGESSVSCSSCGAPGVLRTANTANNRGRKFYTCQSQECTFFVWEDSINNGTGGRGSARSNNVPTSTRGRNGGRGPRGRGRSGSNSSSGTFVTATGDPISGRRCFTCGDPSHFANVCPNRGV* 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1415 924 SMART toprim5 7 142 IPR006171 -
Psa5g1415 924 Gene3D - 2 169 - -
Psa5g1415 924 SMART topIaneu2 292 552 IPR003602 GO:0003677|GO:0003916|GO:0006265
Psa5g1415 924 Gene3D Topoisomerase I, domain 3 240 498 IPR013825 -
Psa5g1415 924 Pfam GRF zinc finger 810 849 IPR010666 GO:0008270
Psa5g1415 924 Gene3D Topoisomerase I, domain 2 176 600 IPR013824 -
Psa5g1415 924 Gene3D - 763 797 - -
Psa5g1415 924 PRINTS Prokaryotic DNA topoisomerase I signature 116 129 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa5g1415 924 PRINTS Prokaryotic DNA topoisomerase I signature 216 234 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa5g1415 924 PRINTS Prokaryotic DNA topoisomerase I signature 334 343 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa5g1415 924 PRINTS Prokaryotic DNA topoisomerase I signature 416 432 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa5g1415 924 PRINTS Prokaryotic DNA topoisomerase I signature 514 528 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa5g1415 924 Gene3D Topoisomerase I, domain 4 300 430 IPR013826 -
Psa5g1415 924 SUPERFAMILY Retrovirus zinc finger-like domains 757 794 IPR036875 GO:0003676|GO:0008270
Psa5g1415 924 ProSiteProfiles Zinc finger CCHC-type profile. 904 921 IPR001878 GO:0003676|GO:0008270
Psa5g1415 924 Pfam Toprim domain 9 153 IPR006171 -
Psa5g1415 924 CDD TOPRIM_TopoIA_TopoIII 7 166 IPR034144 -
Psa5g1415 924 SMART c2hcfinal6 905 921 IPR001878 GO:0003676|GO:0008270
Psa5g1415 924 SMART c2hcfinal6 771 787 IPR001878 GO:0003676|GO:0008270
Psa5g1415 924 PANTHER PROKARYOTIC DNA TOPOISOMERASE 7 699 IPR000380 GO:0003677|GO:0003917|GO:0006265
Psa5g1415 924 Gene3D Bacterial Topoisomerase I, domain 1 624 674 - -
Psa5g1415 924 MobiDBLite consensus disorder prediction 855 895 - -
Psa5g1415 924 SUPERFAMILY Prokaryotic type I DNA topoisomerase 8 599 IPR023405 -
Psa5g1415 924 PANTHER DNA TOPOISOMERASE 3-ALPHA 7 699 - -
Psa5g1415 924 MobiDBLite consensus disorder prediction 783 809 - -
Psa5g1415 924 MobiDBLite consensus disorder prediction 855 871 - -
Psa5g1415 924 SMART topIban2 145 246 IPR003601 GO:0003677|GO:0003916|GO:0006265
Psa5g1415 924 Pfam DNA topoisomerase 170 589 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa5g1415 924 ProSiteProfiles Zinc finger CCHC-type profile. 772 787 IPR001878 GO:0003676|GO:0008270
Psa5g1415 924 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 329 343 IPR023406 GO:0003917
Psa5g1415 924 ProSiteProfiles Toprim domain profile. 7 152 IPR006171 -
Psa5g1415 924 CDD TOP1Ac 173 600 IPR013497 GO:0003677|GO:0003916|GO:0006265
Psa5g1415 924 Pfam Topoisomerase DNA binding C4 zinc finger 637 674 IPR013498 GO:0003677|GO:0003916|GO:0005694|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1415 Psa-Chr5 109488741 109516776 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1415 K03165 - jre:109018851 1461.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1415 5 109488741 109516776 Psa5g1415 5 109488741 109516776 ECH