Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1359 ATGTTCATGGCTACACTAAATTGTTCAAAATGTGTCATGTTGGTGACACTTTTAGTAACCATGTTTTTCATCATTCCAACTTCCTCAACCTCAAGAGGATCTCTCAGCCCTCACAAAATCTCTCATCACGGCTTCCGAGTCGCTCTTCGCCATGTTGATTCGGGCAAAAACTTGACGAAATTCGAGCGAGTTCAACATGGCATCAACCGCGGACATAGCCGACTCCAAAGACTTAACGCAATGGTGTTATCATCATCATCAACAAGTCATGATTCTTCTCAGTTCGAAGCACCGATTCGTGCGGGAAATGGCGAATATCTAATGGAACTATCCATTGGAACACCACCAGTTTCTTATCCAGCAGTTCTAGACACAGGAAGTGATCTCATTTGGACTCAATGTAAGCCATGCTCACAATGTTACAACCAACCAACACCAATCTTTGATCCAAAAAAATCCTCAACTTTTTCAAAACTCTCATGTAGTAGCAACCTATGCAGCGCTTTACCTTCCTCATCTTGTAACAAAAACGGTTGCAATTATGTTTATTCATATGGTGATAACTCAATGACACAAGGTATTTTAGGCAGTGAAACATTCACTTTTGGTGATGAAAGCAACAAAAAAAACAAAGTTTCTGTTCAAAACATTGGTTTTGGTTGTGGTGAAGACAATGAAGGTGAAGGATTTGAACAAGCTTCGGGGTTAGTTGGATTAGGACGAGGTTCTCTATCTTTGGTTTCTCAACTAAAAGAACAAAAATTCTCTTATTGTTTAACCTCAATGGATGACACAAAAGAAAGTGTTCTTTTCTTAGGTTCTCTTGCAAATGTTCATGTCACAAAACATGTCACAACACCACTTATTACAAATCCATTACAACCCTCTTTTTATTATCTTTCGCTCGAAGGAATCTCGGTTGGTGACACAAGATTATCCATTGAGAAATCAACTTTTGAGGTTAGTGATGATGGAAGTGGAGGCATGATTATTGATTCCGGCACAACGATTACTTACATTGAAGAAAATGCTTTTCATTCATTGAAGAAAGAGTTTATATCACAAACGAATTTACCCGTCGATGAATCGGGTTCGACCGGATTAGATGTTTGCTTTAGTCTTCCATCAGGGAAAACACAAGTTGAAATTCCAAAACTTGTTTTTCATTTTAAAGGCGGTGATTTGGAGTTGGCGGGCGAAAATTATATGATCGGTGACTCGAGTTTAGGCGTGGCTTGTTTAGCTATGGGAGCTTCTAATGGAATGTCTATATTTGGTAATGTTCAACAACAGAATATTTTGGTGAATCATGATCTTGAGAAAGAAACTATTTCTTTTGTTCCTACTCAGTGTAATAAATTGTGA 1365 0.3832 MFMATLNCSKCVMLVTLLVTMFFIIPTSSTSRGSLSPHKISHHGFRVALRHVDSGKNLTKFERVQHGINRGHSRLQRLNAMVLSSSSTSHDSSQFEAPIRAGNGEYLMELSIGTPPVSYPAVLDTGSDLIWTQCKPCSQCYNQPTPIFDPKKSSTFSKLSCSSNLCSALPSSSCNKNGCNYVYSYGDNSMTQGILGSETFTFGDESNKKNKVSVQNIGFGCGEDNEGEGFEQASGLVGLGRGSLSLVSQLKEQKFSYCLTSMDDTKESVLFLGSLANVHVTKHVTTPLITNPLQPSFYYLSLEGISVGDTRLSIEKSTFEVSDDGSGGMIIDSGTTITYIEENAFHSLKKEFISQTNLPVDESGSTGLDVCFSLPSGKTQVEIPKLVFHFKGGDLELAGENYMIGDSSLGVACLAMGASNGMSIFGNVQQQNILVNHDLEKETISFVPTQCNKL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1359 454 Gene3D Acid Proteases 82 272 IPR021109 -
Psa5g1359 454 PANTHER OS08G0469000 PROTEIN 18 453 - -
Psa5g1359 454 PRINTS Pepsin (A1) aspartic protease family signature 112 132 IPR001461 GO:0004190|GO:0006508
Psa5g1359 454 PRINTS Pepsin (A1) aspartic protease family signature 329 340 IPR001461 GO:0004190|GO:0006508
Psa5g1359 454 Pfam Xylanase inhibitor C-terminal 298 447 IPR032799 -
Psa5g1359 454 SUPERFAMILY Acid proteases 100 451 IPR021109 -
Psa5g1359 454 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 329 340 IPR001969 GO:0004190|GO:0006508
Psa5g1359 454 Gene3D Acid Proteases 273 454 IPR021109 -
Psa5g1359 454 PANTHER OS07G0603500 PROTEIN-RELATED 18 453 - -
Psa5g1359 454 CDD pepsin_A_like_plant 105 451 IPR034161 -
Psa5g1359 454 Pfam Xylanase inhibitor N-terminal 106 274 IPR032861 -
Psa5g1359 454 ProSiteProfiles Peptidase family A1 domain profile. 106 447 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1359 Psa-Chr5 105472161 105474331 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1359 104 454 Miscellaneous Gene Families AT1G44130 26.943 8.84e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1359 - - gmx:100811294 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1359 5 105472161 105474331 Psa5g1359 5 105472161 105474331 ECH