Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1346 ATGGCAGCTGAGTTAGTTAACGCTGCAACAAGCGACAAATTGTCTGAAACGGATTGGACGAAAAATATTGAAATATGTGAGTTGGTTGCACGTGATAAAAGGCAAGCTAGAGATGTTGTTAAAGTTATCAAGAAGAAACTCGGAAGCAAACACCCAAACACTCAACTTTATGCTGTCACGTTGCTGGAAATGTTGATGAACAATACTGGAGAGCATATTCATGAGCAGGTGATTGATATCGGAGTTATTCCTATTCTTGTGAAAATCGTGAAGAAAAAGTCTGATTTGCCTGTGAGAGAGAGGATATTTCTCCTACTAGATGCCACGCAATCATCCCTTGGTGGTGCTTCTGGAAAATTTCCTCAGTATTATCATGCATATTATGATTTGGTGAATGCCGGAGTGCAGTTTCCTCAAAGTGCTCAAGTGGTCGAATCAAATCACGCTAGTTCACAACCTAGTAGGACTGGTAGTATACCAAACAGGGAGCAGGCTTCACCTAGACATGAAGCGGCTGTACCACAAGCAGAGTCCAAAACAGTTCCTGAATCTAGCATTATTCAAAAGGCTGGTAATGCATTGGAAGTTTTGAAGGAAGTCCTTGATGCTGTTGATGCTCAACATCCTCAGGGAGCAAGTGATGAATTCACACTTGATCTTGTAGAACAATGTTCATTTCAGAAGCAAAGGGTAATGCATCTTGTGATGGCTTCTCGAGATGAGAGGACAGTTTCTCGAGCAATTGAACTAAACGAACAGCTTCAGAAAGTTCTTGCAAGACATGAGGACCTTGTTTCTGGCAGCACTACAACAACTGCAAATGAACAGATTCCAAAAGATCTTCCAAGACACGATAACGTTGTATCTGGACGAGCTACAACAACTTCTAATGAACAGTTTCCAAAAGTTCTTCCAAGACGCGGTGACCTTGTTTCTGGCAGAACTACGACAAATGCTAATGAACAACTTCCAAAAGTTCTTCCAAAACGCGATGATGTTGTATCCGGCAGAGCTACAGCAACTGTTGCTACTCATTTCGACCTCGAAGAATCAGAGGAGGAAGAAGAGCCTGAACAGTTAGTAAGAAGATTACGCAAAGGAAAGGCTTGTGCAAGACCTGAAGACGAAGAAACCGAAACCGACATCTCTCGCATGCGTATGAACGGGGAGAGACTCAACCGTCCCTTAATACGACCACTGTCCTCAGAACCATCTCGAGAAGCTTACAATCCTGCTCCTCCACCACGTCCAAAACATAACGATGAGCTTCCGCTTCCTCACGTGGCGATTCCACCACCACCTGCAAAACACATTGAGAGGGAGAAATTTTTTCAGGAAAACAAGGATGCTTCTAATCTATCTGGCCACATGAGAGGTCTCTCTTTACATAGTCGCAATGGCAGCAGCTCTCGCAGTGGAAGCTTTGATTTTAGAGACTAA 1440 0.434 MAAELVNAATSDKLSETDWTKNIEICELVARDKRQARDVVKVIKKKLGSKHPNTQLYAVTLLEMLMNNTGEHIHEQVIDIGVIPILVKIVKKKSDLPVRERIFLLLDATQSSLGGASGKFPQYYHAYYDLVNAGVQFPQSAQVVESNHASSQPSRTGSIPNREQASPRHEAAVPQAESKTVPESSIIQKAGNALEVLKEVLDAVDAQHPQGASDEFTLDLVEQCSFQKQRVMHLVMASRDERTVSRAIELNEQLQKVLARHEDLVSGSTTTTANEQIPKDLPRHDNVVSGRATTTSNEQFPKVLPRRGDLVSGRTTTNANEQLPKVLPKRDDVVSGRATATVATHFDLEESEEEEEPEQLVRRLRKGKACARPEDEETETDISRMRMNGERLNRPLIRPLSSEPSREAYNPAPPPRPKHNDELPLPHVAIPPPPAKHIEREKFFQENKDASNLSGHMRGLSLHSRNGSSSRSGSFDFRD* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1346 479 MobiDBLite consensus disorder prediction 143 163 - -
Psa5g1346 479 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 1 275 - -
Psa5g1346 479 PANTHER ENTH/VHS/GAT FAMILY PROTEIN 316 479 - -
Psa5g1346 479 SUPERFAMILY ENTH/VHS domain 4 139 IPR008942 -
Psa5g1346 479 PANTHER TOM1-LIKE PROTEIN 1 275 IPR044836 GO:0035091|GO:0043130|GO:0043328
Psa5g1346 479 PANTHER TOM1-LIKE PROTEIN 316 479 IPR044836 GO:0035091|GO:0043130|GO:0043328
Psa5g1346 479 MobiDBLite consensus disorder prediction 357 388 - -
Psa5g1346 479 ProSiteProfiles GAT domain profile. 178 266 IPR004152 GO:0035091|GO:0043130
Psa5g1346 479 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Psa5g1346 479 Coils Coil 244 264 - -
Psa5g1346 479 MobiDBLite consensus disorder prediction 143 184 - -
Psa5g1346 479 CDD VHS 2 130 - -
Psa5g1346 479 MobiDBLite consensus disorder prediction 448 479 - -
Psa5g1346 479 Pfam VHS domain 5 109 IPR002014 GO:0035091|GO:0043130
Psa5g1346 479 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Psa5g1346 479 Gene3D - 2 136 IPR008942 -
Psa5g1346 479 Gene3D - 177 275 IPR038425 -
Psa5g1346 479 MobiDBLite consensus disorder prediction 440 479 - -
Psa5g1346 479 MobiDBLite consensus disorder prediction 348 423 - -
Psa5g1346 479 Pfam GAT domain 194 267 IPR004152 GO:0035091|GO:0043130
Psa5g1346 479 SUPERFAMILY GAT-like domain 145 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1346 Psa-Chr5 104815296 104818971 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1346 - - mtr:MTR_3g097280 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1346 5 104815296 104818971 Psa5g1346 5 104815296 104818971 ECH