Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1225 ATGGAAGGTTCGAAAGACCCCAATTCAAACCCGGGTCGGGTCGACGACTCAGATTCAGAACTCGAACTCTACACCATCCCAAGCTCTACCAGATGGTTCGCGTGGGACGAAATCCACGAAACGGAGAAAACAGCTTTCAAGGAGTACTTCGATGGAACCTCAATTTCGAGAACGCCGAAGATATACAAAGAATACAGAGACTTCATCATCAACAAGTACCGCGAGGAACCTTCTAGAAGGCTTACATTCACCGAGGTGCGAAAGTCTCTAGTTGGTGACGTTACGTTTCTGTACAAGGTTTTCCTTTTCTTAGAGAGTTGGGGTTTGATCAACTACGGCGCGCCTTCTGGTGGTGACGGTGGGGAAGCGGAGAAGGAGCACGAGGAGGAGAGGTGTGAGGTGAAGGTCGAGGAAGGAGCTCCCAGTGGGATTCGTGTTGTGGCTACGCCGAACTCGTTGAAACCTCTTTTGTTGCCGCGTGATGCCAAGGTTGGTACTGGTGGTGATAATGGGAGGGGAGTTGGTATCAAAATGCCGCCACTGGCATCGTATTCTGATGTTTATGGAGATTTGATTCGACAGAAGGAGGTCAATTGTGGGAATTGTGATGCCAAATGTGGTTCTGAACACTACCGAAGTACCAAGGATAACCTCATCATCTGCACAAAATGTTTCAAAAACGGGAATTTTGGGGAGAAAGGGACCATGGAGGATTTCATACTAAATGAGTCAAGTGAAATTAGTGCCAAACATAGTGCTGTCTGGACGGAGGGAGAAACTCTCCTTCTCTTAGAATCTGTTTTGAAGCATGGAGATGACTGGGAACTTGTTGTTCAAAGTGTTCAAACCAAGACTAAGCTTGATTGTATTTCAAAACTCATTGAGCTTCCTTTCGGGGAGCTCATGTTAGGCTCTGCTCACAGAAATGGTAACAGTAGTAGTGCTACTGGCATCATGAACAACGAAAAACAAGTTCAGTCTTCTTCATCCGATCCCCTAGAAACTTCAAAAACACAGGAAACTTCTACAGCAAAGGTTCAATCATCTGAGCCTAAAAATGAAAACGAGCAGAATGGAGATGCTGTGCATGAAAGTCCTTCCAAAAGGCAGCGTGTTGCTCCCCTTTCAGATTCCAGCTGTTCACTAATGAAGCAGGTGGGACTGCTCTCTACAGTGGTTGACCCTCATATCACAGCTGCTGCAGCTGATGCTGCTATTTCAGCACTTTGTGATGAGAATTTGCTCCCAAGGGATATATTTGATGTTGAAGAGGATAATGCTTCTAGTGCAAGAACTCTTGGCGGTGAAGATTTAGAGATGGTGGAGAGGTCGACTCAATCAGAAGTAAAAGATGGCATACCATTGACACTAAGAATAAGAGCTGCCATTGGAACCGCTCTTGGAGCTACTGCTGCTCGTGCAAAATTGTTGGCGGACCAAGAAGAGAAAGAGATTGAACATTTAGTAGCAACTATAATTGAAGCTCAGATTGAGAAGCTGCAACAAAAGGTGAAACATTTTGATGAACTGGAGCTTTTGATGGAAAAGGAACATGCTGAAATGGAAGAGCTGAAAGATTCAATTTTGATTGAACGGATTGATGTGATGCGGAGGACATTTAAATCTGGCATCGCTAGATGGAAGGACTATCCTTGTGCAAAATCTTAG 1668 0.4496 MEGSKDPNSNPGRVDDSDSELELYTIPSSTRWFAWDEIHETEKTAFKEYFDGTSISRTPKIYKEYRDFIINKYREEPSRRLTFTEVRKSLVGDVTFLYKVFLFLESWGLINYGAPSGGDGGEAEKEHEEERCEVKVEEGAPSGIRVVATPNSLKPLLLPRDAKVGTGGDNGRGVGIKMPPLASYSDVYGDLIRQKEVNCGNCDAKCGSEHYRSTKDNLIICTKCFKNGNFGEKGTMEDFILNESSEISAKHSAVWTEGETLLLLESVLKHGDDWELVVQSVQTKTKLDCISKLIELPFGELMLGSAHRNGNSSSATGIMNNEKQVQSSSSDPLETSKTQETSTAKVQSSEPKNENEQNGDAVHESPSKRQRVAPLSDSSCSLMKQVGLLSTVVDPHITAAAADAAISALCDENLLPRDIFDVEEDNASSARTLGGEDLEMVERSTQSEVKDGIPLTLRIRAAIGTALGATAARAKLLADQEEKEIEHLVATIIEAQIEKLQQKVKHFDELELLMEKEHAEMEELKDSILIERIDVMRRTFKSGIARWKDYPCAKS* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1225 555 Gene3D - 30 116 IPR036388 -
Psa5g1225 555 SMART sant 251 299 IPR001005 -
Psa5g1225 555 PANTHER BRAHMA ASSOCIATED PROTEIN 155 KDA 22 542 - -
Psa5g1225 555 SUPERFAMILY Homeodomain-like 31 113 IPR009057 -
Psa5g1225 555 MobiDBLite consensus disorder prediction 322 355 - -
Psa5g1225 555 SUPERFAMILY Homeodomain-like 252 302 IPR009057 -
Psa5g1225 555 ProSiteProfiles SWIRM domain profile. 24 121 IPR007526 GO:0005515
Psa5g1225 555 Coils Coil 471 527 - -
Psa5g1225 555 PANTHER SWI/SNF COMPLEX-RELATED 22 542 - -
Psa5g1225 555 Pfam SWIRM-associated region 1 465 541 IPR032451 -
Psa5g1225 555 Gene3D - 251 299 - -
Psa5g1225 555 Pfam Myb-like DNA-binding domain 255 293 IPR001005 -
Psa5g1225 555 ProSiteProfiles SANT domain profile. 250 301 IPR017884 -
Psa5g1225 555 Pfam SWIRM domain 27 112 IPR007526 GO:0005515
Psa5g1225 555 CDD SANT 255 292 IPR001005 -
Psa5g1225 555 MobiDBLite consensus disorder prediction 322 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1225 Psa-Chr5 95351442 95357665 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1225 K11649 - gmx:100790238 746.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1225 5 95351442 95357665 Psa5g1225 5 95351442 95357665 ECH