Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1218 ATGGAGGAAGCTCCATGTTCTTCATCGGCGGCGAGATCGAGCACCAAAGGAAAATCCTCAAACGATCTCAACATCGGTATTACCTTGCTGAACGACGATCTTCTCCACAACATTCTCACCAGACTCCCTGCTCTATCGTTCGCGTCCGCATCTTGCGTTAGCAAATCATGGAATTCCATTTGCAGTCGCATCATTTCTCGTCCCAAGCTCTCTTCTGCACTTTCCCTAAATCCTTCACTTCGTGAGGCTGTGAAGGAGGTTGTTAACAAGGTTCTATCCGAGCCAATTCGACCTCATTTTGCTATTGTCAATGTTGGATGTGGATTCGATGCGAACAAGATTCTTCGCCTTATTCAACGGAAATTAGGGTTTAATATTCCGATTATTGTCACTGTCAATAATGGTATTATTGGAAGGGACGCACTTACCGATGAATTTAAAGAGGTCAAATGGGGTGCCCTTTTTAGTGGTATTGGTGACGATGAATATGCAAGACATATTAATGAAGGCATAGTTTTGACAATTGGCTACTTGCCAGGATTGAAAGTGGAAGCTATACCGTTAATACGACCGCCAAAGACACCTCAAGAACCATGCGTTGATAGTTTTATTATGGATATCAAAGAATACTCAGCCTCCGTTTCTGGTCGCCAATTCCCCATTGGGGTTATATTATTTGGAGAAGCCAGCACTGATATGAAACTGGTTCTGGAGAAGCTGGATTATGCCATGCCCATAGACACAGTCATTGTGGGTGATGAGAGAGGATGCTCGGTATTCAGATGCGGAAATGATTCTAGAAACGCATGTTTTAGTAAAGGGTTCATAGAAGCTGTTGCTCTTGTATTTGCTCAGGACAGAAACAGGTCTTCTGGAAACATTAGATTTCATGTTGCTTTCTCAAATGGTGTTTCACCTGTGGGTGGCAAATACAAAGCAGCTTCAGTTAGAACAAACAGCACCGATTGTTCAACATGGTTAACTGCCAAAAGGGAAGGGCATCAAGAACTTCTTGATGGTGAGAGTATTCTGCACGATATTAACACTTTGCTGGAAAATCACATTGAGCCTCCTGAGTTGTACATTGGGGTAACTAAAAATAGGAAAGTCTCCATTGGAGCAGAGAAGCCAATGCCAAGAACGTGTATTGCATATCATGGAGTTGTGGGAGGTGATGAAGAGTATCTGTATGTTGATGGAATGGGCATCAAAACAGGTGATATCTTTCGGTTCTACCATTCTGCTCCTAATGCCGCATTGGCTTCATTAGCTGAGGTTCGTGATGCCCTTAACAATATGAAGCTGGAGAAGAATTCCAGGAGTTTCGAGGGTAATGGAGACAATGCTACCAATGTTTTTGGCGGTATTCTTTTTGCTTGTTATGGCCGCGGCGATTCATTTTTTGGACGTCCTAATGCTGATAGCTCCCCCTTCTTAGAGAATTTTCCAGGAGTGCCATTTGCTGGAATATTTTGTTGTGGAGAAATGGTGCGTCCTTGTACCACTTTGATTGGTCCATCTCCAGATGCAAAGCCCATCAGTTGCTTTTTGCATGTTTATAGCAGTGTCTATTTAGTGATGTCATATGATCCTCCTCCCTCTGCAGAACATTAG 1614 0.4312 MEEAPCSSSAARSSTKGKSSNDLNIGITLLNDDLLHNILTRLPALSFASASCVSKSWNSICSRIISRPKLSSALSLNPSLREAVKEVVNKVLSEPIRPHFAIVNVGCGFDANKILRLIQRKLGFNIPIIVTVNNGIIGRDALTDEFKEVKWGALFSGIGDDEYARHINEGIVLTIGYLPGLKVEAIPLIRPPKTPQEPCVDSFIMDIKEYSASVSGRQFPIGVILFGEASTDMKLVLEKLDYAMPIDTVIVGDERGCSVFRCGNDSRNACFSKGFIEAVALVFAQDRNRSSGNIRFHVAFSNGVSPVGGKYKAASVRTNSTDCSTWLTAKREGHQELLDGESILHDINTLLENHIEPPELYIGVTKNRKVSIGAEKPMPRTCIAYHGVVGGDEEYLYVDGMGIKTGDIFRFYHSAPNAALASLAEVRDALNNMKLEKNSRSFEGNGDNATNVFGGILFACYGRGDSFFGRPNADSSPFLENFPGVPFAGIFCCGEMVRPCTTLIGPSPDAKPISCFLHVYSSVYLVMSYDPPPSAEH* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1218 537 PANTHER F-BOX ONLY PROTEIN 22 27 534 - -
Psa5g1218 537 SMART fbox_2 30 70 IPR001810 GO:0005515
Psa5g1218 537 SUPERFAMILY F-box domain 27 62 IPR036047 GO:0005515
Psa5g1218 537 SMART FIST_C_2 343 499 IPR019494 -
Psa5g1218 537 Pfam F-box domain 30 66 IPR001810 GO:0005515
Psa5g1218 537 Gene3D - 23 70 - -
Psa5g1218 537 Pfam FIST N domain 109 317 IPR013702 -
Psa5g1218 537 Pfam FIST C domain 402 497 IPR019494 -
Psa5g1218 537 PANTHER SKP2-LIKE, FIST C DOMAIN, FIST DOMAIN, N-TERMINAL ISOFORM 1 27 534 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1218 - - gmx:100815778 789.645