Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1180 ATGCTTCACCAGCCATTACTCTACAGTTCAAGAACCCTCACTCAACCAACACTCCTTGCTTCGATTTTCTCCGGCACCGGCAACAATCCCGGACGCACTTCACTTGCCGGAAATTTCTCTCACCGTGATATTCGGTTGGAGTTTAGTATGCAAGCATCTGGAAGCAATTCGAGTAATAGTGGCCGTGGAAGCTTTAGTGAGACAAGAGAAGGCTTAAAGGTTAGAACAACTAATGCTAATGCTTATGGGCGTGCTCAAGAAGAGGTGAATAAGGACGAAGCCTTCAAAGTGATGGAGACCAGACCATTGTGGGAAGTTTCTCCAGGCCAAGCATTTCCGTTGGGTGCATCACAAGTCGACAACGGGATCAACTTTGCTATTTTTTCACAACATGCAACTGCTGTCACACTTTGTTTGGTCCTTCCTAAAAGGGAAAGCATTGACACACTGGATGGTGGTACGATAGAACTGGCTTTGGACCCTCATTTAAACAAAACAGGGGACATTTGGCACATACGTATTGAGGATCTTCCTAGGAGCAATGTTCTGTACGGGTATCGGATAGATGGATCTCAAGACTGGGGTAAGGGGCATCGATTTGACAGAAGCATTGTGCTTGTTGATCCTTATGCAAAACTAGTTGAAGGTCGGAGATATTTTGGGGATATTAGCAAGAAGTTTTCTAAGTTTCTGGGCACATATGATTTTGACAGCTTGCCTTTTGACTGGGGAGAGAATTATAAGCTTCCAAATATTGCCGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAATGGATGAATCTAGTGGGTTGGATAACAACATTCGTGGAAGCTATCTTGGCGTGATTGAGAAGATCCCACATCTTCTAGAGCTTGGCATCAATGCAGTGGAGTTGCTGCCTATCTTTGAGTTTGATGAGTTGGAATTGCAGAGGCGTCCAAATCCTAGAGATCACATGATTAATACGTGGGGTTATTCAACAATAAATTTCTTTGCTCCAATGAGTCGCTATGCTAGTGCTGGAGGAGGACCAGCTAATGCTTCCCAAGAGTTCAAGCAAATGGTTAAAGCCTTACATTCTGCTAGCATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGACCCCAATCCTTACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGACGACAAAGGACAATTGCTGAACTTTTCTGGCTGTGGAAATACATTGAATTGTAACCATCCTGTGGTCATGGAGCTAATTCTTGACAGCCTAAGACATTGGGTAACTGAGTATCATGTTGATGGATTTCGATTTGATCTTGCAAGTATATTGTGTCGAGGAACTGATGGTTCACCCCTCAATGCTCCTCCACTCATCAGGGCAATTGCTAAGGATGCAGTCTTGTCAAGATGTAAAATTATTGCAGAGCCTTGGGACTGTGGTGGTCTCTATCTTGTTGGAAGTTTTCCTAATTGGGATCGATGGGCTGAATGGAATGGGAAATATCGTGATGACGTACGGAAATTTATCAAGGGTGATTCTGGTACCAAGGGGAGCTTTGCAACTCGTGTTTCTGGATCTTCTGATCTTTACAGAGTGAACAAACGCAGACCATATCATGGTATTAATTTTGTTATTGCACATGATGGATTCAGCCTGCATGATCTTGTTTCATACAACTTGAAGCACAATGAAGCTAACGGGGAAGGTGGAAATGATGGATGCAATGATAACTTTAGTTGGAATTGTGGTTTTGAAGGTGAAACTGATGATACTAGTATAAGAGCTTTGCGGTCGAGGCAAATGAAAAACTTTCATTTGGCATTAATGGTTTCTCAGGGAATACCAATGATGCTAATGGGGGATGAATATGGTCATACTCGCTATGGAAATAACAATAGTTATGGGCATGATTCTGCCATTAATTTTCTCCTGTGGGATCAGTTAGATGCAAGGAAGGGTGATCACTTTAGGTTTTTCTCCAATGTGATAAAGTACCGGCTTGGACATAAAATATTCAGTCATGAAAATTTTCTCAGTGAGAATGAAATAACATGGCATGAAGACAATTGGGACAATTATGAAAGCAAATTTCTTGCATTTACGCTTCATGACAAAAGTGGGGGAGACGTCTATTTAGCTTTTAATGCTCATGACTACTTTTTGAAAGTTCTGCTTCCCACACCCCCAACAAAGAGAAGGTGGTATCGCGTGGTGGACACTAATCTTGAATCACCTGATGACTTGGTCCTTGACGGTGTTCCTGGCATAGGAAAAACGTACAGTATAGCTCCATACTCCTCCATTCTTCTGGAGGCAAAGTTTTGA 2358 0.4198 MLHQPLLYSSRTLTQPTLLASIFSGTGNNPGRTSLAGNFSHRDIRLEFSMQASGSNSSNSGRGSFSETREGLKVRTTNANAYGRAQEEVNKDEAFKVMETRPLWEVSPGQAFPLGASQVDNGINFAIFSQHATAVTLCLVLPKRESIDTLDGGTIELALDPHLNKTGDIWHIRIEDLPRSNVLYGYRIDGSQDWGKGHRFDRSIVLVDPYAKLVEGRRYFGDISKKFSKFLGTYDFDSLPFDWGENYKLPNIAEKDLVIYEMNVRAFTMDESSGLDNNIRGSYLGVIEKIPHLLELGINAVELLPIFEFDELELQRRPNPRDHMINTWGYSTINFFAPMSRYASAGGGPANASQEFKQMVKALHSASIEVILDVVYNHTNEADDPNPYTTSFRGIDNKVYYMLDDKGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASILCRGTDGSPLNAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDSGTKGSFATRVSGSSDLYRVNKRRPYHGINFVIAHDGFSLHDLVSYNLKHNEANGEGGNDGCNDNFSWNCGFEGETDDTSIRALRSRQMKNFHLALMVSQGIPMMLMGDEYGHTRYGNNNSYGHDSAINFLLWDQLDARKGDHFRFFSNVIKYRLGHKIFSHENFLSENEITWHEDNWDNYESKFLAFTLHDKSGGDVYLAFNAHDYFLKVLLPTPPTKRRWYRVVDTNLESPDDLVLDGVPGIGKTYSIAPYSSILLEAKF* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1180 785 Gene3D - 692 785 IPR013780 -
Psa5g1180 785 MobiDBLite consensus disorder prediction 50 72 - -
Psa5g1180 785 Gene3D Immunoglobulins 96 231 IPR013783 -
Psa5g1180 785 SUPERFAMILY (Trans)glycosidases 240 684 IPR017853 -
Psa5g1180 785 PANTHER GLYCOGEN DEBRANCHING ENZYME 70 783 - -
Psa5g1180 785 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 113 211 IPR004193 GO:0004553|GO:0005975
Psa5g1180 785 CDD AmyAc_Glg_debranch 241 680 - -
Psa5g1180 785 Gene3D Glycosidases 237 691 - -
Psa5g1180 785 SMART aamy 261 668 IPR006047 GO:0005975
Psa5g1180 785 CDD E_set_GDE_Isoamylase_N 112 261 IPR044505 -
Psa5g1180 785 SUPERFAMILY Glycosyl hydrolase domain 691 784 - -
Psa5g1180 785 Pfam Alpha amylase, catalytic domain 282 389 IPR006047 GO:0005975
Psa5g1180 785 SUPERFAMILY E set domains 108 245 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1180 Psa-Chr5 92151525 92168439 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1180 72 784 Glycoside Hydrolase AT4G09020 76.050 0.0 1158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1180 K01214 - gmx:100806342 1338.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1180 5 92151525 92168439 Psa5g1180 5 92151525 92168439 ECH