Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1178 ATGGCATTCTCTAATGCTTTGGTTTTGTGCTTCCTTTTAGCAATCATCAACATGGCACTTCCATCCCTTGCAACTGTCTACACTGTTGGAGATACTTCAGGTTGGGTGATTGGTGGTGATTATAGCACATGGGCTAGTGACAAAACCTTTGCAGTTGGTGATAGCCTCGTGTTCAACTATGGAGCTGGTGCGCACACTGTGGATGAAGTTAAAGAAAGTGACTACAAATCATGCACATCTGGAAATTCAATTAGTACAGACAGTACTGGTGCGACAACCATTCCTCTTAAGAAAGCAGGCAAACATTACTTCATATGTGGTGTTCCGGGACATTGTACCGGTGGCATGAAACTTTCTATTAAGGTTAAGGCCTCTTCTGGTTCTTCTGCTGCTCCTTCTGCAACACCATCATCATCAGGGAAAGGTTCACCTTCTTCTGATGACACCCCCGCCGCAACTACCACCACTACTACTCCAACTAAGCAAAATGAATCTTCAGCTACTAGTCTCTCACCAATTGTTGCTTTGTTTTTTACTGTTTCATGGATCTGTAGCTATGTTTTGGTATGA 570 0.4333 MAFSNALVLCFLLAIINMALPSLATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHCTGGMKLSIKVKASSGSSAAPSATPSSSGKGSPSSDDTPAATTTTTTPTKQNESSATSLSPIVALFFTVSWICSYVLV* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1178 189 MobiDBLite consensus disorder prediction 129 165 - -
Psa5g1178 189 Pfam Plastocyanin-like domain 39 116 IPR003245 GO:0009055
Psa5g1178 189 SUPERFAMILY Cupredoxins 24 122 IPR008972 -
Psa5g1178 189 PANTHER BLUE COPPER PROTEIN 6 184 IPR039391 GO:0009055
Psa5g1178 189 ProSiteProfiles Phytocyanin domain profile. 25 124 IPR003245 GO:0009055
Psa5g1178 189 CDD Phytocyanin 25 122 - -
Psa5g1178 189 Gene3D - 23 129 IPR008972 -
Psa5g1178 189 ProSitePatterns Type-1 copper (blue) proteins signature. 100 116 IPR028871 -
Psa5g1178 189 PANTHER BLUE COPPER PROTEIN-LIKE 6 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1178 Psa-Chr5 92127480 92128902 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1178 12 131 Miscellaneous Gene Families AT1G22480 51.667 8.12e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1178 - - gmx:100306522 221.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1178 5 92127480 92128902 Psa5g1178 5 92127480 92128902 ECH