Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1144 ATGGTGTCCTCAGCTGCGCTTTCTTCTTCAACCTTCACTCTTCCATCTCCACTTCGATTCCACTCCCTAACACCTCGATCCACCGCATTCCCTAACCGCAAATTCTTCAAAACCCGAATGGAAGCCCAAACCAACACCACCGACCATGCAGCAAACCCCAAAGAAGCTAAACTCTGGGGTGGAAGATTCCAAGAATCCGTTACCGACACCGTTGAACGGTTCACCGAATCCGTCTCTTACGATAAACAGTTATACAAACATGACATTCTCGGAAGCACAGCGCATGCAACCATGCTCGCTAAACAGGGTTTGATCACTGAGAGTGATAGGGATTCTATAATTGAAGGTTTGAGAGAGATTGAAAAGAGAATTGAGAATGGTGAGTTTAGTTGGAGAACTGATAGAGAAGATGTTTATATGAATATTGAAGCTGCACTTACTGATTTGATCGGTGAACCTGCTAAGAAGCTACATACTTCCCGGAGTAGAAATGATCAAGCTGTTACTGATACCAGACTTTGGTGTCGCGATGCTATTGATACGATTGTTGCGAGTATGAGACAGTTTCAGGTTGCGCTTCTTAGGCTGGCTTTGAATAATCAGGATGTTATTGTTCCTGGTTATACTCATCTGCAGCGCGCGCAGCCGGTTTTAGTTCAGCACCTTCTGCTTGCTTATGTTGAAGAGATTGAACGTGATGCTGGTCGTTTGATTGATTGTAGAGCTAGGATGAATTTCAGTCCTTTAGGGGCTTGTGCACTGGCCGGTACAGGGCTCCCCATTGACCGGTTCATGACATCAGATGCATTGGGATTTACAGCTCCGATGAGGAATAGTATTGATGCAGTTTCTGACCGAGATTTTCTACTGGAGTTTCTTTCTGCTAATGCCATCACAGCAGTGCATCTTTCTCGACTTGGTGAAGAATGGGTATTGTGGGCTTCAGAAGAATTTGGATTTATCACTCCAAGCGACTCTGTTTCAACAGGAAGCAGCATAATGCCTCAGAAAAAGAATCCAGACCCAATGGAACTTGTTCGTGGTAAGTCTGGCAGAGTCATAGGGAGTTTGGTCACTCTTCTAACAGTGTGCAAAGGACTTCCACATGCTTACAATCGCGATTTGCAGGAAGACAAAGAACCAGTGTTTGACAGTGTTAGAGCTATTTTGGGAATGCTTGAAGTCTCAGCAGAATTTGCAATGAACATTACTTTCAATCGGGAAAGAATAAAAAAGTCTTTACCTGCCGGTTTTCTTGATGCAACAACACTTGCTGACTATCTTGTTAAGAAGGGTGTGCCATTCAGAACATCTCATGAAATAGCTGGAAAATCTGTTGCCTTGTGTACTTTGAGGAATTGTCAACTGCTGGACTTGAGCCTTGATGAGCTGAGAAGTATAAATCCTATCTTTGACAATGATGTGTATGAATTTCTTGGGGTAGAAAACTCGGTCAAGAAATTTGTTTCGTATGGTTCCACCGGGTCTGCTTGTGTTGCCGAGCAACTTGACTATTGGGTTAAAAAGCTTGAAGTTAAGTGA 1542 0.4358 MVSSAALSSSTFTLPSPLRFHSLTPRSTAFPNRKFFKTRMEAQTNTTDHAANPKEAKLWGGRFQESVTDTVERFTESVSYDKQLYKHDILGSTAHATMLAKQGLITESDRDSIIEGLREIEKRIENGEFSWRTDREDVYMNIEAALTDLIGEPAKKLHTSRSRNDQAVTDTRLWCRDAIDTIVASMRQFQVALLRLALNNQDVIVPGYTHLQRAQPVLVQHLLLAYVEEIERDAGRLIDCRARMNFSPLGACALAGTGLPIDRFMTSDALGFTAPMRNSIDAVSDRDFLLEFLSANAITAVHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSGRVIGSLVTLLTVCKGLPHAYNRDLQEDKEPVFDSVRAILGMLEVSAEFAMNITFNRERIKKSLPAGFLDATTLADYLVKKGVPFRTSHEIAGKSVALCTLRNCQLLDLSLDELRSINPIFDNDVYEFLGVENSVKKFVSYGSTGSACVAEQLDYWVKKLEVK* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1144 513 ProSitePatterns Fumarate lyases signature. 330 339 IPR020557 GO:0003824
Psa5g1144 513 PANTHER ARGININOSUCCINATE LYASE 39 511 IPR009049 GO:0004056|GO:0042450
Psa5g1144 513 Gene3D Fumarase/aspartase (Central domain) 174 503 - -
Psa5g1144 513 Gene3D - 415 487 - -
Psa5g1144 513 PANTHER ARGININOSUCCINATE LYASE 39 511 - -
Psa5g1144 513 PRINTS Argininosuccinate lyase family signature 156 178 - -
Psa5g1144 513 PRINTS Argininosuccinate lyase family signature 197 217 - -
Psa5g1144 513 PRINTS Argininosuccinate lyase family signature 248 264 - -
Psa5g1144 513 PRINTS Argininosuccinate lyase family signature 286 310 - -
Psa5g1144 513 PRINTS Argininosuccinate lyase family signature 330 346 - -
Psa5g1144 513 PRINTS Argininosuccinate lyase family signature 365 384 - -
Psa5g1144 513 TIGRFAM argH: argininosuccinate lyase 58 505 IPR009049 GO:0004056|GO:0042450
Psa5g1144 513 PRINTS Fumarate lyase superfamily signature 157 175 IPR000362 -
Psa5g1144 513 PRINTS Fumarate lyase superfamily signature 202 220 IPR000362 -
Psa5g1144 513 PRINTS Fumarate lyase superfamily signature 286 313 IPR000362 -
Psa5g1144 513 PRINTS Fumarate lyase superfamily signature 330 346 IPR000362 -
Psa5g1144 513 SUPERFAMILY L-aspartase-like 58 510 IPR008948 GO:0003824
Psa5g1144 513 Pfam Lyase 61 355 IPR022761 -
Psa5g1144 513 Pfam Argininosuccinate lyase C-terminal 418 485 IPR029419 -
Psa5g1144 513 CDD Argininosuccinate_lyase 77 510 IPR009049 GO:0004056|GO:0042450
Psa5g1144 513 Hamap Argininosuccinate lyase [argH]. 57 508 IPR009049 GO:0004056|GO:0042450
Psa5g1144 513 Gene3D - 77 284 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1144 Psa-Chr5 89342373 89345945 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1144 K01755 - gmx:100796544 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1144 5 89342373 89345945 Psa5g1144 5 89342373 89345945 ECH