Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1109 ATGGCGAATCACGCTCTCAACGCCGGAATACGACGCATCAGCTTTGTTTTGAGCGCACGAAATCTTTGGATCCAAGCAGAATCTCGTGCTTCTGCATTTTCAGAGAAACAGAACCTGAAGAGCCTAATTGCTGGATTCAAACCTTCAAGTCGGAGTCCATTGCTGTTGCTTCAAAATTGGATTGACCAAGGTAACAAGCTTTCACCATCGGAACTCAGATGCATCTCCAGAACCCTAATAAAATCCAAACGCTATAACCACGCTTTAGAGGTGTTGAAGTGGATGGAAAACCAAAAACAATTCCGTCCAAATCCAGCTGATCATGCAATGAAAGTGGAGTTAATCATTAAAAATTATGGCCTAATGGAAGCTGAAGAATATTTTATGAGTATACGTGACTCAGCTGGAAAGAAAGCTGCGTATCTTCCACTTCTACGTGGCTATGTAAGAGATAGGGAAATCAGTAAAGCTGAGACTTTCATGGAGAAGCTCTATGAAATGGGGCTAGTTGTTAACCCTCACCCTTATAATGAGATGATGAAACTATATCTTGCCACATGTGAGTATCGGAAGGTGCCCCTTGTTATCCAGCAAATGAAACGAAATAAAGTACCCTGCAATGTTTTGTCCTACAACCTTTGGATGAATGCTTGTGATGAGGGAAAAGGATATGGGGTTGCAGCAGTGGAAACAGTTTTTAGAGCAATGCAAAATGATGAGAATGTTGAGGTGGGATGGAGCAGTCTTGCTACTTTAGCCAATGCTTATATGAAAGCAGGGCAATCTGAGAAAGCCATTCTAGTTCTCAAAAATGCTGAAGAGAAACTATCTACCTGTGACCGTCTTGGTTACTTCTTCATCATAACACTATATGCCTCTTTGAAGCAAAAGGAGGGAGTCTTGCGGTTGTGGGAAGCCAGTAAGGCAGTTGGTGGAAGAATCAATTGTGCTAACTACATTTGCATACTAACATGCTTGGTGAAGCTTGGGGACATAGCACAAGCAAAGAGAATCTTCAATGAATGGGAGTCTAATTGTCAGAAATATGATATCAGAGTCTCTAATGTTCTTTTAGGTGCATATGTGCGGAATGGAGCGATTGAAGAAGCTGAATCATTACATCTTCACACATTGCAGAAGGGTGGTTATCCAAACTACAAGACATGGGAGATTCTCATTGAAGGATATGTCAAGAGGCAAAAGATGGACGAGGCTATTATTGCCATGAAAAGAGCTTTGGCTATGTTGAAAGACTGTCATTGGAGGCCACCACAAGGACTTGTATTAGCCATAGCTGAGTATTTGGAGAAATGTGGGAATTTTGAATATGCAAACGAGTACATCAGAGATATTCATAATCTAGGTCTTGGAAGTTTATCATTGTACAAAGTATTGCTTAGAATGCACCTTTCTGCTAAAAAACCACCTCAACATATCCTTAAAATGATTAATGAAGACAAAGTTGAGATGGATAGTGAGACATTTTCCATTCTTAAAGCCTTCACTGGGTTGGTAGCATAA 1521 0.4063 MANHALNAGIRRISFVLSARNLWIQAESRASAFSEKQNLKSLIAGFKPSSRSPLLLLQNWIDQGNKLSPSELRCISRTLIKSKRYNHALEVLKWMENQKQFRPNPADHAMKVELIIKNYGLMEAEEYFMSIRDSAGKKAAYLPLLRGYVRDREISKAETFMEKLYEMGLVVNPHPYNEMMKLYLATCEYRKVPLVIQQMKRNKVPCNVLSYNLWMNACDEGKGYGVAAVETVFRAMQNDENVEVGWSSLATLANAYMKAGQSEKAILVLKNAEEKLSTCDRLGYFFIITLYASLKQKEGVLRLWEASKAVGGRINCANYICILTCLVKLGDIAQAKRIFNEWESNCQKYDIRVSNVLLGAYVRNGAIEEAESLHLHTLQKGGYPNYKTWEILIEGYVKRQKMDEAIIAMKRALAMLKDCHWRPPQGLVLAIAEYLEKCGNFEYANEYIRDIHNLGLGSLSLYKVLLRMHLSAKKPPQHILKMINEDKVEMDSETFSILKAFTGLVA* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1109 506 Gene3D Tetratricopeptide repeat domain 252 436 IPR011990 GO:0005515
Psa5g1109 506 Gene3D Tetratricopeptide repeat domain 52 241 IPR011990 GO:0005515
Psa5g1109 506 PANTHER OS02G0796400 PROTEIN 12 501 - -
Psa5g1109 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Psa5g1109 506 PANTHER OS12G0527900 PROTEIN 12 501 - -
Psa5g1109 506 Pfam Pentatricopeptide repeat domain 164 218 IPR002885 -
Psa5g1109 506 SUPERFAMILY TPR-like 140 444 IPR011990 GO:0005515
Psa5g1109 506 Pfam PPR repeat 355 374 IPR002885 -
Psa5g1109 506 Pfam PPR repeat 388 406 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1109 Psa-Chr5 86265144 86269793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1109 56 438 EF-hand Containing Proteins AT1G02150 33.594 2.23e-77 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1109 - - gmx:100803685 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1109 5 86265144 86269793 Psa5g1109 5 86265144 86269793 ECH