Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1085 ATGTTTGTCACCGGGGATTTAGGGTTTTCGAACCTAGTCCTTGTGGTGGTTTGTGTGGTGTTGCCGGTGATTGGTTTTGTAATTTGCCGGAAATGGCAGGTTGCGGTGGCTAGGAATGAGGAGATCAAGAGGCTTTTGGTTTTGGCTGCTGAGGAAACTGAAAGGGTTGAGAGAGAGGCGTTATATGTGTCTGCCCCGGTGGTTTTCGCTCCTGTTAACAATTATCAATGTGCTCTCTGCTATTTTCCCGCCACTGCACGCTGTGCTAAGTGCAAATCCGTTCGCTACTGTTCTACTCATTGCCAAACCGTTCATTGGCGTCAAGGTCATAAATTTGAATGTCATCCTCCCAGCAAAACACATCAGAGCGATGGCGTAATACGTGGTATTGACAAGAGGAAAGTGGAGCAAGATTACTCTGGTATCCATGAGGAGAAATCTGAAAACAGAGGTGCAGAGTGTAAAATACCCTCTCAAGGTATCAGCTTTTCTCCCAAGGCTTCATTTGAAAAGTATGATAATATTAAAGCTGGGTTCCTTGCAGAGGAAATTTTAGCAGATACTAATTCTGAATTATCTAGTAATTCATTTTCTGGATTTTCGGCTTCCCCAAGTTCCAGTGATTTATCTGATGATTCCTCTGTCTATGAGAATATCTCAAATGAGCATGACCGATCAGAGGGACATATTTCTTTTGTTCCCACCCTTGACATAACTGATAAAACCACAAGCATTAGCAATGTGGACGCAGCAATGTCTTCTTCTCCAAAGTTTGCTAGTTTGCTTGATTCAGTCGGTGGTTCTTCTACAGTTCATAAATTAAATCATATCACACCTGGTTCTAGTAAAGAAGAGAGGGAGCTTGCATCAATTGGTGCTTTAGGCTCAAGCGTGTGGAAGGGTGTGAAAAGTGAGCCTTCTGGATTCTGGGATAAAGCTCTTGATTCAAGAGAGATTAAAGATAACACTAATAATAAAACTTATCCATCCCATTCTGATGCATCCACTTGTGGAAAGGCTGATTCTGAATTGTCATTCCGCTTTCAATTCGGCACCATGCCTCCTTTGCATGTACGAGATACTGAGGCTAAGGAATCTTTGCCTGATGACACTCTTCTAAACTCTGTTAGGAAGAATATGCCACATCCAGGATCAGCATCATCTGAGAACAACAACATGAATTCTTCAAAGGTGAGGAACCTCTCATTCACCAATAGTGAAGATCCCAATTTTATTAGCAAAGCTCGCAGTGGTTCTGGATCTGATCAATTGGAATCTAAAGACAGCTCTGAGTCACCTCTACATCCCTTTTCCTCCCAATCCTCCAGTATTGGCAAAGATCCAGGTTCTACAGATACTAAGAGCATCCATAACTTGCCAGCATCTGGCTCCGTGGCATCAAATCATGTTGTGGACAACCATGGCTGCACCTCTAAGTCCACCGATGTTATATGCAAGACACGCGAGCTTGCTGATTCTAAAATAGCTCCTACAAATGAAGAACATTCAGAGCCAAGTGCAAAACATATGAATAATGGCATTGAATATGGGACTGTCAATTCTTCTCATGTTAGCTACTCTGCAAATTATAAGAGTGGCATGAAAACATCTGTTTTAAAAGTCGTTGATCAGATTAGAGGATCAAATTTGTCCAAGCACACTGCCTTAGCCCTTGGGAGTGATATTGCTGGAAAATACTATGACAAGGGTCTTTTTCCATATGAATCATTTGTCAAGCTTTATAACTTCAACAAGGTGGAGTTGCGCCCGTTCGGTCTTATAAATTGTGGAAACAGTTGTTATGCTAATGCTGTACTTCAGTGCCTAGCTTTTACTCCGCCCTTAACTGCTTATTTTCTTCAAGGACTACATTCTAAATCATGTACAAATAAAAAATGGTGCTTCACCTGTGAATTTGAAAGTTTGATTTTGAAGTCAAAGGACACAAAATCTCCACTATCTCCAATGAGCATACTTTCTCAATTACAGAGTATTGGGAGCCAGCTTGGTAATGGCAAAGAAGAAGATGCACATGAATTTATAAGACATGCTATTGACACAATGCAATCTGTTTGCCTTATGGAAGCTGGGGTTAATGCATCGGGTTCATTGGAAGAGGACACCACTTTAATGGGTCAAACATTTGGAGGATACCTTCGTTCAAAGATAAAATGCATGAAATGTGGTGGGAAGTCTGAGCGTCAGGAAAGGATGATGGATCTAACTGTTGAGATAGAAGGGGAGATATCAACACTTGCCGAAGCCCTTCGACGTTTCACAAGCACTGAGACTTTGGATGGAGAAAATAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCACCCAATATTCTTACCGTTGCATTAAAGAGATTTCAGTCTGGAAAATTCGGGAAGCTCAACAAGCCTATTCAATTTCCTGAAATACTTGATCTTGCACCTTTCATGAGTGGGTCTAGTGATAAGACACCCATATACAGATTATATGGTGTGGTTGTTCATTTGGATATTATGAATGCTTCTTTTTCAGGGCACTATGTGTGCTACTTGAAGAATATTCAAAACAAGTGGTTCAAGGTTGACGACAGTGTGGTGACAGCTGTTGAAGTGGAGAGAGTCTTGACAAAAGGAGCATATATGCTTTTTTATGCAAGGTGCTCTCCAAGGGCCCCTAAATTAATTAGGAACATGATACTATCCCAAGATTCAAAAAATAAGGTCAATGGAAAGTCTCCTACAACGAAAGCAAAATCTGTGTCGTCAAATTCTGGTGCAGCTGAACCCATCAGCAGTTCAGTTTCTTCAGACAGCTCACCCACCTTGGAGTCTTTCTATTCAAGGTTTCACCACCTGAAAAGGATTTTAGAAGTAGACTCATCAAGTGATAGTTCATCCCTTTTCAGCAGTAACTCCGAGGAACTTTCTTGCAGTACTGATAGTACCCGTGATTCAACTAGCATGGACGACTTCTCCGACTATATTTTTGGTGATTCAGGGCATGGATGGAGTAGCCCGTGGAGGAGTTCTGATTCGGACTCGTCCTCATCCTCTCCCTTGAATTACAGACACTCACCATTATCTGACATGGACAAGTATGATTCAGTGTCCCCAGATACAACCGGTTCAAGTGTGAAGACAGATAGGGGTGGTGGTATATCTCATTTTCATTCTGACACAATTTTACAGAATAAAAAGTTAGATAGTAGTAGCATTAGCAGCAATAGTAGTAGTAGAGATGCTGACTCGTCTCTGAAAGTAGGATCTAACCATTCTAATGATAAGAACTGTGGTGTATCGAGTAGAAAGTCAAGGAAAAGAACGGATTGA 3357 0.4141 MFVTGDLGFSNLVLVVVCVVLPVIGFVICRKWQVAVARNEEIKRLLVLAAEETERVEREALYVSAPVVFAPVNNYQCALCYFPATARCAKCKSVRYCSTHCQTVHWRQGHKFECHPPSKTHQSDGVIRGIDKRKVEQDYSGIHEEKSENRGAECKIPSQGISFSPKASFEKYDNIKAGFLAEEILADTNSELSSNSFSGFSASPSSSDLSDDSSVYENISNEHDRSEGHISFVPTLDITDKTTSISNVDAAMSSSPKFASLLDSVGGSSTVHKLNHITPGSSKEERELASIGALGSSVWKGVKSEPSGFWDKALDSREIKDNTNNKTYPSHSDASTCGKADSELSFRFQFGTMPPLHVRDTEAKESLPDDTLLNSVRKNMPHPGSASSENNNMNSSKVRNLSFTNSEDPNFISKARSGSGSDQLESKDSSESPLHPFSSQSSSIGKDPGSTDTKSIHNLPASGSVASNHVVDNHGCTSKSTDVICKTRELADSKIAPTNEEHSEPSAKHMNNGIEYGTVNSSHVSYSANYKSGMKTSVLKVVDQIRGSNLSKHTALALGSDIAGKYYDKGLFPYESFVKLYNFNKVELRPFGLINCGNSCYANAVLQCLAFTPPLTAYFLQGLHSKSCTNKKWCFTCEFESLILKSKDTKSPLSPMSILSQLQSIGSQLGNGKEEDAHEFIRHAIDTMQSVCLMEAGVNASGSLEEDTTLMGQTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGEISTLAEALRRFTSTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNILTVALKRFQSGKFGKLNKPIQFPEILDLAPFMSGSSDKTPIYRLYGVVVHLDIMNASFSGHYVCYLKNIQNKWFKVDDSVVTAVEVERVLTKGAYMLFYARCSPRAPKLIRNMILSQDSKNKVNGKSPTTKAKSVSSNSGAAEPISSSVSSDSSPTLESFYSRFHHLKRILEVDSSSDSSSLFSSNSEELSCSTDSTRDSTSMDDFSDYIFGDSGHGWSSPWRSSDSDSSSSSPLNYRHSPLSDMDKYDSVSPDTTGSSVKTDRGGGISHFHSDTILQNKKLDSSSISSNSSSRDADSSLKVGSNHSNDKNCGVSSRKSRKRTD* 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1085 1118 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 21 1096 - -
Psa5g1085 1118 MobiDBLite consensus disorder prediction 1043 1057 - -
Psa5g1085 1118 MobiDBLite consensus disorder prediction 415 452 - -
Psa5g1085 1118 Pfam Ubiquitin carboxyl-terminal hydrolase 591 893 IPR001394 GO:0004843|GO:0016579
Psa5g1085 1118 SUPERFAMILY HIT/MYND zinc finger-like 72 117 - -
Psa5g1085 1118 MobiDBLite consensus disorder prediction 914 944 - -
Psa5g1085 1118 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21 1096 - -
Psa5g1085 1118 ProSitePatterns Zinc finger MYND-type signature. 77 114 IPR002893 -
Psa5g1085 1118 MobiDBLite consensus disorder prediction 1015 1118 - -
Psa5g1085 1118 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Psa5g1085 1118 SUPERFAMILY Cysteine proteinases 587 899 IPR038765 -
Psa5g1085 1118 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 592 607 IPR018200 GO:0004843|GO:0006511
Psa5g1085 1118 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 591 896 IPR028889 -
Psa5g1085 1118 Coils Coil 39 59 - -
Psa5g1085 1118 MobiDBLite consensus disorder prediction 1066 1106 - -
Psa5g1085 1118 Gene3D Cysteine proteinases 584 909 - -
Psa5g1085 1118 Pfam MYND finger 77 114 IPR002893 -
Psa5g1085 1118 MobiDBLite consensus disorder prediction 1015 1033 - -
Psa5g1085 1118 Gene3D - 68 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1085 Psa-Chr5 84308417 84315637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1085 571 952 Miscellaneous Gene Families AT4G31670 47.135 2.49e-122 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1085 K11855 - gmx:100793079 1342.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1085 5 84308417 84315637 Psa5g1085 5 84308417 84315637 ECH