Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1078 ATGAACAACACAAGTGCCGAATTGTCTCAGGGAAATAATGGCGGTGCTTCTATTCCTCCTCCTAACCCCCAGTCTGGACCACCAGAGCATCAGACTTCTCGTGGTTCCGGAAACAATGCGATTTTCAAGAGTGGACCGCTTTTCATATCTTCCAAAGGAATTGGATGGACATCGTGGAAGAAAAGGTGGTTTATTTTAACACAAACTTCACTTGTTTTCTTCAGAAGTGATCCGAATGCTGTGCCTCTAAAGGGAAATGAAGTGAATTTGACCCTTGGTGGCATTGATCTCAACAATTCAGGCAGCGTCATTGTTAAAGCAGATAAGAAACTTTTGACTGTACAATTTCCCGACGGTCATGATGGACGAGCATTCACACTTAAGGCTGAAACTACGGAGGACTTGTACGAGTGGAAGATTGCACTCGAGAAAGCTTTAGCACAAGCGCCAACTGCTGCCAATGCGTCGGAGCAAAATGTGAAGGATAGAGAACCAGCCAAATCTACGGTAATTGGCCGACCGATTTTACTTGCTTTGGAGGATGCTGATGGAACTCCATCGTTTTTGGAGAAAGCACTGAAATTCATGGAAGAGCATGGAGCTAGCGTAGAAGGGATCTTGCGACAAGCAGCTGATGTTGATGATGTTGAACGCCGTGTTCGGGAATATGAACAAGGAAAATCTGAGTTTGCTCCGGATGAAGATGCACATGTCATTGGTGATTGTATTAAGCATGTTATTCGGGGATTGCCATCTTCTCCGGTCCCTGCATCTTGCTGTAAGGCACTGTTAGAAGCTTGCCGAACTGAACGCGGTGTTAGAGTTGCTTCTATGCGCGCAGCAATAAATGACACTTTTCCTGAACCAAATCGCCGCTTATTGCAAAGAATACTGTTGATGATGCAAACTGTGGCTTCACAAAAAGCTGTAAACAGAATGAGTTCCTCAGCTGTGGCAGCTTGCATGGCACCATTACTTCTTCGTCCCCTTCTAGCCGGAGAGTGTGAGATCGATAATGATTTTGATGTAGGTGGTGATGGTTCTGTTCAACTTCTACAAGCAGCTGCAGCTGCTAATCATGCCCAAGCAATTGTTATAACCTTATTAGAAGAATATACCAGCATATTTGGGGAAGGTTCCGAGTCCCCTGATATATACACCGACTCAGAAGAGAGTGGATCTGAGAGTGAGGAAGGTACTGATGATGATCTATCCTATGATGATGATGATGATGATTATGACGATGAATCAGTGCAAGAATCTGATGAAGATGATGTTGTCAGCGAATCCTACACTGAAACTGGAGATTCTGAGGCTGACGATTACGATGACAAGGATCGTGATCATTCTCGTTCAAGTTCAAAATCCTCAGATGTGAGTGATGAAGTTAAAGTCGATCAAATGTTAACACAGTCACGCGAAGGCTCACCGATTGAACATGAAAATGCCAAAGGTAGTGAAAATCTCAGAAGTCCTAAGACGGCAGCTAATGCAGATAAATCCAATAAGCCCGTTGAAACTTCTACTGATCTAGATGGTATGCATGATTCAAATTCTTCTAGTCAATCACATATGAAAAAGTCTGCAACCATGTCCAATGGCCCAGCACCTCGGCACCGAAACATGTTGGGGCGCACCTCTGCAAGGAAGAACTTATCTATGGAATCCATTGACCTTCCTAGTGAAGAGGATGATGAAATGGAAAAGCTTGAAGCTGCTAAGACAGAACTACAAAACCAAATTGCAGATGAGGTGAAGGAGAATGAAAAGCTGCAATCAAAGATCGATGAACGAAAGCAAGACATACGAGAGCGGCGTTTGGCACTTGAGCAAGATGTGGCTAAACTACAAGAACAGTTACACAAGGAGAAGAGTTCTCGGGCAACTCTTGAGACTAGGGTAGAACTTCAGGAATTAGCTCTGGTAGAAGTGGATCTTTCCAACTTAGAGCGGATGGTTGAGGAGCTTGCGCAGCGGCTTAATGTTAAAATCGAGCATAAATATCTATCTACTTCAAGTATCAGGAAGACATCGCGACAATTATCAAATCAGGAAAGAAAAATGAAACGTAAGGGAGATGCTGAAGTTTCTGCGACATCACAATATGAAAGGTCAATGAGTAAGGACTCTATTCTTAGCGGAGGAGAAAGTGATTCTGAGAGAAAGCCAGAGTCGACGCCTTCACAAAACAAACAGCCACCAACATCCAAGAGAGCTACTTCAAGGGGTGAGGTGGGCCGAAGTCAAGCTGTAAATGAACTACAAAACGCGGATAGAGGCCGAGAGTCGAGTCAGTCTTCGCGCAACCAAGATAAAGGAAAAGGATCTGAACGTCACCAACCACTTCCTTCCCCGAGAATGAACCCAGAAAAAGGTAAAGTCATGGAGAATTCCAAGTCACTGGAAAAAGGATCGAGCAAAGGTAAATCACAACAAAGTTCAGAGAAATTTAGAAAGTCAGATAGTCAGCCAGGCTACCACTCAGAAGGATGGGATCAACATACAGCTTACTTAGAAAGAGGAAGGTCAGAAGGGCATCATCAGTCTTTTAACGTGGATAAAGGTCGATGA 2571 0.4395 MNNTSAELSQGNNGGASIPPPNPQSGPPEHQTSRGSGNNAIFKSGPLFISSKGIGWTSWKKRWFILTQTSLVFFRSDPNAVPLKGNEVNLTLGGIDLNNSGSVIVKADKKLLTVQFPDGHDGRAFTLKAETTEDLYEWKIALEKALAQAPTAANASEQNVKDREPAKSTVIGRPILLALEDADGTPSFLEKALKFMEEHGASVEGILRQAADVDDVERRVREYEQGKSEFAPDEDAHVIGDCIKHVIRGLPSSPVPASCCKALLEACRTERGVRVASMRAAINDTFPEPNRRLLQRILLMMQTVASQKAVNRMSSSAVAACMAPLLLRPLLAGECEIDNDFDVGGDGSVQLLQAAAAANHAQAIVITLLEEYTSIFGEGSESPDIYTDSEESGSESEEGTDDDLSYDDDDDDYDDESVQESDEDDVVSESYTETGDSEADDYDDKDRDHSRSSSKSSDVSDEVKVDQMLTQSREGSPIEHENAKGSENLRSPKTAANADKSNKPVETSTDLDGMHDSNSSSQSHMKKSATMSNGPAPRHRNMLGRTSARKNLSMESIDLPSEEDDEMEKLEAAKTELQNQIADEVKENEKLQSKIDERKQDIRERRLALEQDVAKLQEQLHKEKSSRATLETRVELQELALVEVDLSNLERMVEELAQRLNVKIEHKYLSTSSIRKTSRQLSNQERKMKRKGDAEVSATSQYERSMSKDSILSGGESDSERKPESTPSQNKQPPTSKRATSRGEVGRSQAVNELQNADRGRESSQSSRNQDKGKGSERHQPLPSPRMNPEKGKVMENSKSLEKGSSKGKSQQSSEKFRKSDSQPGYHSEGWDQHTAYLERGRSEGHHQSFNVDKGR* 857
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1078 856 MobiDBLite consensus disorder prediction 511 530 - -
Psa5g1078 856 Pfam RhoGAP domain 186 329 IPR000198 GO:0007165
Psa5g1078 856 SMART RhoGAP_3 183 373 IPR000198 GO:0007165
Psa5g1078 856 PANTHER RHO GTPASE-ACTIVATING PROTEIN REN1 4 764 - -
Psa5g1078 856 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 4 764 - -
Psa5g1078 856 MobiDBLite consensus disorder prediction 384 441 - -
Psa5g1078 856 MobiDBLite consensus disorder prediction 833 856 - -
Psa5g1078 856 CDD PH 43 138 - -
Psa5g1078 856 MobiDBLite consensus disorder prediction 379 569 - -
Psa5g1078 856 MobiDBLite consensus disorder prediction 442 462 - -
Psa5g1078 856 MobiDBLite consensus disorder prediction 669 856 - -
Psa5g1078 856 MobiDBLite consensus disorder prediction 1 35 - -
Psa5g1078 856 Coils Coil 639 666 - -
Psa5g1078 856 SMART PH_update 41 149 IPR001849 -
Psa5g1078 856 Coils Coil 567 633 - -
Psa5g1078 856 CDD RhoGAP 186 324 - -
Psa5g1078 856 MobiDBLite consensus disorder prediction 726 763 - -
Psa5g1078 856 MobiDBLite consensus disorder prediction 698 713 - -
Psa5g1078 856 SUPERFAMILY GTPase activation domain, GAP 184 378 IPR008936 GO:0007165
Psa5g1078 856 MobiDBLite consensus disorder prediction 1 19 - -
Psa5g1078 856 MobiDBLite consensus disorder prediction 764 779 - -
Psa5g1078 856 MobiDBLite consensus disorder prediction 488 504 - -
Psa5g1078 856 Pfam PH domain 43 146 IPR001849 -
Psa5g1078 856 Gene3D Rho GTPase activation protein 153 377 IPR008936 GO:0007165
Psa5g1078 856 MobiDBLite consensus disorder prediction 680 697 - -
Psa5g1078 856 SUPERFAMILY PH domain-like 28 153 - -
Psa5g1078 856 Gene3D - 29 148 IPR011993 -
Psa5g1078 856 ProSiteProfiles Rho GTPase-activating proteins domain profile. 177 376 IPR000198 GO:0007165
Psa5g1078 856 ProSiteProfiles PH domain profile. 40 147 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1078 Psa-Chr5 83782550 83789801 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1078 - - gmx:100817373 1055.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1078 5 83782550 83789801 Psa5g1078 5 83782550 83789801 ECH