Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1077 ATGAAAATCTCAGCAATTCACTGCTGCAGGCACAGACAACGTAGCTGTGCGACTTCATCTTCTTCGCTACCATGGATATCTCCTCTTAACTTTACAAAACCTGCAGAACCTAAACTAGACCCACCTCCTGAAATCAGAGGCTCTGAAACGAGGAAGAAGAACAAATATATCACTCATGACGTTGCTATAAATTTGATCAAACGAGAGAAAGATCCGCAACATGCCTTGAAAATATTTAACATGATATCCGAACAAAAGGGGTTTTATCACAACAATGCTACCTATGCATCCATTCTTCAAAAGCTTGCTCAGTTTAAGAAGTTTCAAGCTGTTGAACGGGTTTTGCATCAAATGACCTATGAAACTTGTAAATTTCACGAGGGTATATTTATCAACCTTATGAAGCATTACTCAAAATGTTCTTTTCATGAAAAAGTGCTTGATACTTTTTTCTCTATTCAGACAATTGTTCGTGAAAAGCCCTCTCCCAAAGCTATCAGCTCTTGTCTCAATCTCTTGGTTGATTCCAACCGGGTTGATTTGGCGCGGCAGTTACTCTTGCATGCCAAGAGGAGTTTAATTTATAAGCCAAATGTTTGCATTTTCAATATCTTGGTGAAGTACCATTGCAAAAAGGGGGATCTTGAGTCTGCTTTTGAAGTTGTTAAAGAAATGAGGAACTCCAAGTATTCTTATCCTAACATTATTACCTACTCAACCCTGATGGACGGTCTCTGTCGAAACGGAAGACTCAAAGAAGCTTTTGATCTTTTTGAGGAAATGCTTTCGAAGGATCAGATTGTGCCTGATCCCCTTACTTACAATGTTTTGATTAATGGGTTTTGCCGTGGAGGGAAACCTGATCGTGCTAGAAATGTTATTGAGTTTATGAAAAATAATGGATGCTGTCCTAATGTATTCAATTACTCAGCCCTAGTTGATGGATTATGTAAAGCGGGAAAACCGGAAGATGCAAAAGGGGTTTTGGCTGAGATGAAGAACTCTGGTTTGAAACCTGATACGGTTACCTACACTTCTTTGATCAATTTTTTCTGTAGGAATGGGCAAATTGATGAGGCTATAGAGTTGCTTAAAGAAATGAAGGAAAATGAATGCGAGGCTGATACTGTTACATTCAATGTGATACTCGGAGGCTTGTGCAGAGAAGGTAGATTTGACGAGGCTTTGGATATGATTGAGAAACTCCCACACCAAGGTGTCTATTTGAATAAAGGATTAATGCTAAGTAGAGGGTTTGTACCCCATTATGCTACCTCAAATGAATTATTGGTTCGTCTTTGTAAGGACGGGATGGCTGATGATGCTGCTACAGCTCTATTTGACTTGGTGGATATGGGGTTCCAGCCACAACTTGATTCTTGGGAACTTCTAATCGAATTAATCTGCAGAGACAGAAAATTATTGTACGTTTTTGAGCTAATTGATGAATTGGTAACTGCAAATTCCTGA 1470 0.3912 MKISAIHCCRHRQRSCATSSSSLPWISPLNFTKPAEPKLDPPPEIRGSETRKKNKYITHDVAINLIKREKDPQHALKIFNMISEQKGFYHNNATYASILQKLAQFKKFQAVERVLHQMTYETCKFHEGIFINLMKHYSKCSFHEKVLDTFFSIQTIVREKPSPKAISSCLNLLVDSNRVDLARQLLLHAKRSLIYKPNVCIFNILVKYHCKKGDLESAFEVVKEMRNSKYSYPNIITYSTLMDGLCRNGRLKEAFDLFEEMLSKDQIVPDPLTYNVLINGFCRGGKPDRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKPEDAKGVLAEMKNSGLKPDTVTYTSLINFFCRNGQIDEAIELLKEMKENECEADTVTFNVILGGLCREGRFDEALDMIEKLPHQGVYLNKGLMLSRGFVPHYATSNELLVRLCKDGMADDAATALFDLVDMGFQPQLDSWELLIELICRDRKLLYVFELIDELVTANS* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1077 489 SUPERFAMILY HCP-like 209 406 - -
Psa5g1077 489 Pfam PPR repeat 196 226 IPR002885 -
Psa5g1077 489 Pfam PPR repeat 300 333 IPR002885 -
Psa5g1077 489 Gene3D Tetratricopeptide repeat domain 412 489 IPR011990 GO:0005515
Psa5g1077 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Psa5g1077 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Psa5g1077 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Psa5g1077 489 TIGRFAM PPR: pentatricopeptide repeat domain 309 341 IPR002885 -
Psa5g1077 489 TIGRFAM PPR: pentatricopeptide repeat domain 377 410 IPR002885 -
Psa5g1077 489 TIGRFAM PPR: pentatricopeptide repeat domain 342 375 IPR002885 -
Psa5g1077 489 TIGRFAM PPR: pentatricopeptide repeat domain 236 270 IPR002885 -
Psa5g1077 489 TIGRFAM PPR: pentatricopeptide repeat domain 201 233 IPR002885 -
Psa5g1077 489 TIGRFAM PPR: pentatricopeptide repeat domain 273 306 IPR002885 -
Psa5g1077 489 Pfam PPR repeat family 339 388 IPR002885 -
Psa5g1077 489 Pfam PPR repeat family 233 283 IPR002885 -
Psa5g1077 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Psa5g1077 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Psa5g1077 489 Gene3D Tetratricopeptide repeat domain 334 407 IPR011990 GO:0005515
Psa5g1077 489 Gene3D Tetratricopeptide repeat domain 44 226 IPR011990 GO:0005515
Psa5g1077 489 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Psa5g1077 489 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 18 411 - -
Psa5g1077 489 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 412 487 - -
Psa5g1077 489 Gene3D Tetratricopeptide repeat domain 228 333 IPR011990 GO:0005515
Psa5g1077 489 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 18 411 - -
Psa5g1077 489 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 412 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1077 Psa-Chr5 83768385 83770501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1077 133 488 Glycosyltransferase AT1G05670 27.688 2.82e-37 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1077 - - mtr:MTR_3g100600 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1077 5 83768385 83770501 Psa5g1077 5 83768385 83770501 ECH