Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1069 ATGGATTCCGTTCCTTATCTCGACGGCAACATACACAAGATTCTCGATTCCCGATACCTTCACCCTCGCCTTGATGTTAATCAGAGTTTGCAGACTCACTCCTCCTTGATTCGGAGGCTTTCTCAAGAGAAAGAGTTGGAGGGACATCTTGGTTGTGTTAATGCTGTGGCTTGGAATTCAAAAGGATCGTTATTGATATCCGGATCAGATGATACACGGATTAATATTTGGAGCTATTATAGTCAGAAACTAGTGCATTCAATTGAAACTGGACATACTGCGAATATATTCTGTACTAAGTTCATACCAGAGACTTCTGATGAGCTTGTAGTCTCTGGAGCTGGAGATGCTGAAGTTCGGTTATTCAATAGGTCTCGCTTGAGTGGGAATGGACTTGATGATATTGCCGTTGTTCCATCAGCACTTTACCAATGCCACACTCGTAGAGTCAAGAAATTGGCTGTTGAAAATGGAAACCCCAATGTGGTATGGAGTTCCAGTGAAGATGGAACCTTAAGACAACATGATTTTCGGGAAGGTACCTCTTGTCCTCCTGCAGGAGCTTCACATCAAGAATGTCACAATGTTCTGCTTGATTTGCGGAATGGAGCTAAAAGATCCCTTGGTGATCCTCCTAAACAAGTTCTTTCTTTAAAATCTTTTGATATTAGTTCAACTAGACCTCATTTGCTCCTTGTTGGCGGGAGTGATGCTTTTGCACGTCTGTATGATAGAAGGATGTTACCACCTCTAAGCTCCTCTGGGAAAAGAATGTCCCCACCTCCATGTGTTAATTATTTCTGTCCAATGCATCTTTCTGACCGTGGACATCCAAATTTGCACTTAACTCACGTTACTTTTAGTCCTGATGGATCCGAGGTTCTCCTTAGCTATAGTGGAGAGCATGTTTACTTGATGAATGTAAATCACGCTGGAGTGAATGAGGTGCAATATACTTCAGGTGATGTATCAAAGCTGGTGACTTACTCTCCAACAGTTAATGGGGTAGAATTGCAGCCTTTTGTGCCTAATGTCTTCCCAAATGGTTTTCATGCTAAAAAGAACATCGCTGCTAAGCTTGACAAGTGTAGGAAACTAATAAAATATGCTAAGAAGTCATTAGAGGAGGGGGTCTTCTATTATGGAATTGAGGCTTGTAATGAAGTTATGAATGGCTACAATCATATTATTGGGCCTGCACTAAAACATGAATGCTTGTGTACTCGTGCTGCACTATTGCTCAAGAGGAAGTGGAAAAACGATGCTCATATGGCTATAAGAGACTGCCATGCTGCTAGGAAAATTGACAAATCCTCATATAAACCACTGTACTACATGTCAGAAGCTTTGTCTCAGTTGGGTAAACACAAAGAAGCTTTGGATTTTGCTGTTGCGTCCCACTCACTGGCCCCATCCAAATCTGAAGTTGCTGAAAGAGTGGAGAAGGTGAAGAAGGATATTGTTTTAGCTGAAACTGAGAAAAATAGTAAGAAAAATGATGGAGCATCAAGGACTGACAGAAGGGGTGGAAGAATGTTATCATTAAGTGACATACTCTACCAATCAGAGGCTAATAGTGATGCTTCGCAAGATGGTCCGGGATCTGACAGGGATGATTCTGATTATGATGAGGATTTGGAGTTGGACTTTGAAACATCAATATCTGATGATGAGGGACATGATTCTGATTCAAATATTCTTCATGGGAGTTTGAATCTTAGAATTCATCAAAGAGGTGACTCAGAAGAACATGTTGGTGCAAGTGGCTCGTGTGAATCACCCTCCTCCTCCTCCTCATCACAGAATGGTAGAGCGTCATATCAGCCTGAAGCAGCAATTGATATGAAGCAGAGGTTTATTGGACACTGCAATGTGGGGACTGATATAAAACAGGCCAATTTTCTTGGTCAAAGAGGTGAATATGTTGCCAGCGGAAGTGATGATGGCAGATGGTTTATTTGGGAAAAGCGAACTGGTAGACTCATGAAAATGCTGAATGGCGACGAATCTGTTGTAAATTGCATACAATGTCATCCGTTTGATTTTGCTGTGGCGACCAGTGGGATTGACAGCACAATAAAGATATGGACTCCAAGTGCTCCTGTTCCTTCTTCTGTAGCTGGTGGTTCTGCAGGACCAGAGACTGGTGATGTGTTGACTGCTATGGAGAACAATCAACAAAAGTTATCCCGTAATAGGGATTCAATCCTGCCCTTTGAGCTCTTAGAACCATTTAGAATGCATGAATTTCCTGAAGGATCACTACGCATGCGACCTTTTGAATGTGCTCAAAGCTAA 2298 0.4199 MDSVPYLDGNIHKILDSRYLHPRLDVNQSLQTHSSLIRRLSQEKELEGHLGCVNAVAWNSKGSLLISGSDDTRINIWSYYSQKLVHSIETGHTANIFCTKFIPETSDELVVSGAGDAEVRLFNRSRLSGNGLDDIAVVPSALYQCHTRRVKKLAVENGNPNVVWSSSEDGTLRQHDFREGTSCPPAGASHQECHNVLLDLRNGAKRSLGDPPKQVLSLKSFDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSSGKRMSPPPCVNYFCPMHLSDRGHPNLHLTHVTFSPDGSEVLLSYSGEHVYLMNVNHAGVNEVQYTSGDVSKLVTYSPTVNGVELQPFVPNVFPNGFHAKKNIAAKLDKCRKLIKYAKKSLEEGVFYYGIEACNEVMNGYNHIIGPALKHECLCTRAALLLKRKWKNDAHMAIRDCHAARKIDKSSYKPLYYMSEALSQLGKHKEALDFAVASHSLAPSKSEVAERVEKVKKDIVLAETEKNSKKNDGASRTDRRGGRMLSLSDILYQSEANSDASQDGPGSDRDDSDYDEDLELDFETSISDDEGHDSDSNILHGSLNLRIHQRGDSEEHVGASGSCESPSSSSSSQNGRASYQPEAAIDMKQRFIGHCNVGTDIKQANFLGQRGEYVASGSDDGRWFIWEKRTGRLMKMLNGDESVVNCIQCHPFDFAVATSGIDSTIKIWTPSAPVPSSVAGGSAGPETGDVLTAMENNQQKLSRNRDSILPFELLEPFRMHEFPEGSLRMRPFECAQS* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1069 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Psa5g1069 765 MobiDBLite consensus disorder prediction 588 607 - -
Psa5g1069 765 MobiDBLite consensus disorder prediction 579 607 - -
Psa5g1069 765 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 22 764 IPR045151 -
Psa5g1069 765 SMART WD40_4 265 307 IPR001680 GO:0005515
Psa5g1069 765 SMART WD40_4 81 123 IPR001680 GO:0005515
Psa5g1069 765 SMART WD40_4 39 78 IPR001680 GO:0005515
Psa5g1069 765 SMART WD40_4 612 655 IPR001680 GO:0005515
Psa5g1069 765 SMART WD40_4 211 244 IPR001680 GO:0005515
Psa5g1069 765 SMART WD40_4 658 697 IPR001680 GO:0005515
Psa5g1069 765 SMART WD40_4 136 176 IPR001680 GO:0005515
Psa5g1069 765 Gene3D - 130 333 IPR015943 GO:0005515
Psa5g1069 765 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 22 764 - -
Psa5g1069 765 Gene3D - 613 749 IPR015943 GO:0005515
Psa5g1069 765 Coils Coil 473 500 - -
Psa5g1069 765 Gene3D - 25 129 IPR015943 GO:0005515
Psa5g1069 765 Pfam WD domain, G-beta repeat 44 78 IPR001680 GO:0005515
Psa5g1069 765 Gene3D Tetratricopeptide repeat domain 348 487 IPR011990 GO:0005515
Psa5g1069 765 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Psa5g1069 765 ProSiteProfiles Trp-Asp (WD) repeats profile. 665 696 IPR001680 GO:0005515
Psa5g1069 765 SUPERFAMILY WD40 repeat-like 39 696 IPR036322 GO:0005515
Psa5g1069 765 SUPERFAMILY TPR-like 401 476 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1069 Psa-Chr5 83085158 83101568 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1069 639 749 Miscellaneous Gene Families AT5G08390 28.319 4.21e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1069 K11807 - gmx:100793917 1271.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1069 5 83085158 83101568 Psa5g1069 5 83085158 83101568 ECH