Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1066 ATGTTCAAGGGAAGAAGAAGAAGCATGACATTGACATGCTTTTACCACTTTACCCATTCAAATTCAACATCACTCACTCATCATAACTATAATTCCCTTATTACCCCCACCTTCTCTTCTACTCTTCACAACCATAAACCTCTCTTTCACTTATTTCAGGGAATTCTAAGGCCTACAATTCGATCATTTTCTACAACATTCACTTCTTCGTGTAAAGCCATGGCGAATTTCGATTCTGATTCCGTAACTTATCTCAAACAACAAGAAGCCGCTGAGATTGATGAAACTCTCATGGGTCCTCTTGGCTTCAGTGTCGATCAGCTCATGGAATTGGCTGGTTTGAGCGTCGCTACCTCCATATATGAGGTTTATAAACCAGGTGAGTATAGTCGTGTTCTTGTTGTATGTGGTCCTGGTAACAATGGCGGTGATGGTCTGGTGGCTGCCCGTCACCTACATCACTTTGGTTATAAGCCCTTTGTCTGCTACCCAAAGCGTACCCCCAAGCCTCTTTATGCTGGGTTAGTTACTCAGCTTGAAGCGCTGTCGATCCCTTTCTTGTCGGTAGAAGATCTGCCCTCTGATATCTCCAAGGACTTTCATATTCTACTAGATGCCATGTTTGGATTCTCATTTCACGGTTCTCCAAGGCCTCCCTTTGATGATTTGATCCAAAGACTTGTTTCTTTAAGTAGCCATAATCAATCAGGCCAAAAAAGACCAGTTATAGTCTCTGTAGATATTCCTTCTGGGTGGCATGTTGAAGAGGGAGCCGTTAATGACATAGGAATTAAACCTGATATGTTGATCTCTTTGACAGCACCAAAATTATGTGCAAAGAAGTTTGGCGGCCCTCACCACTTTTTAGGAGGTAGATTTGTCCCACCTGCTATTGCTGAAAAGTATAAGCTTATACTTCCACCATATCCTGGAACATCCACGTGTGTCCGAATCGGAAAGCCTCCTCAAATTGATATTTCTGCTCTACGAGAGAACTATATCTCTCCAGAATTTCTTGAAGACCAGGTGGAGGCAAACCCCTTTAATCAGTTTCGTAAATGGTTTGATGATGCACTGGCTGCGAGTTTGAAGGAACCAAATGCTATGGCCTTGTCAACTGCAGGGAAGGATGGAAAACCCTCATCACGGATCGTATTGCTAAAAGGCTTCGACAAGGATGGATTTGTGTGGTTCACGAATTACGAAAGTCAAAAGGGACGTGCATTGTCTGAAAATCCACACGCATCAATTCTTTTTTATTGGGATGGTTTAATCCGGCAGGTACGTGTGGAGGGGTATGTTCAGAAAATTTCTGAGGAGGAATCAGAGCAGTATTTCCATAGCCGTCCTAGAGGAAGTCAGATTGGAGCAATAGTCAGCAAGCAGAGTTCTGTAGTGCCGGGTAGGCATGTTCTTCATGAACAATACAAAGAATTGGAACAAAAATATGCCGATGGAAGTTTGATCCCTAAACCTAAAAACTGGGGAGGATTCAGGTTAACGCCACATCTTTTTGAATTCTGGCAAGGACAGCAATCTCGCTTGCATGACAGGTTGCGATATGTTCCCCATGAGATCGATGGGCAAAAGCTGTGGAAGATTGAGCGGTTGGCTCCCTGA 1620 0.4352 MFKGRRRSMTLTCFYHFTHSNSTSLTHHNYNSLITPTFSSTLHNHKPLFHLFQGILRPTIRSFSTTFTSSCKAMANFDSDSVTYLKQQEAAEIDETLMGPLGFSVDQLMELAGLSVATSIYEVYKPGEYSRVLVVCGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTPKPLYAGLVTQLEALSIPFLSVEDLPSDISKDFHILLDAMFGFSFHGSPRPPFDDLIQRLVSLSSHNQSGQKRPVIVSVDIPSGWHVEEGAVNDIGIKPDMLISLTAPKLCAKKFGGPHHFLGGRFVPPAIAEKYKLILPPYPGTSTCVRIGKPPQIDISALRENYISPEFLEDQVEANPFNQFRKWFDDALAASLKEPNAMALSTAGKDGKPSSRIVLLKGFDKDGFVWFTNYESQKGRALSENPHASILFYWDGLIRQVRVEGYVQKISEEESEQYFHSRPRGSQIGAIVSKQSSVVPGRHVLHEQYKELEQKYADGSLIPKPKNWGGFRLTPHLFEFWQGQQSRLHDRLRYVPHEIDGQKLWKIERLAP* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1066 539 Hamap NAD(P)H-hydrate epimerase [nnrE]. 86 321 IPR004443 -
Psa5g1066 539 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 87 281 IPR004443 -
Psa5g1066 539 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 505 518 IPR019740 GO:0016638
Psa5g1066 539 Gene3D - 333 530 IPR012349 -
Psa5g1066 539 Pfam Pyridoxamine 5'-phosphate oxidase 355 441 IPR011576 -
Psa5g1066 539 PANTHER NAD(P)H-HYDRATE EPIMERASE 78 524 IPR032976 -
Psa5g1066 539 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 332 539 IPR000659 GO:0004733|GO:0008615|GO:0010181
Psa5g1066 539 Gene3D - 81 323 IPR036652 -
Psa5g1066 539 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 495 539 IPR019576 -
Psa5g1066 539 SUPERFAMILY FMN-binding split barrel 340 539 - -
Psa5g1066 539 Pfam YjeF-related protein N-terminus 106 278 IPR004443 -
Psa5g1066 539 ProSiteProfiles YjeF N-terminal domain profile. 90 306 IPR004443 -
Psa5g1066 539 SUPERFAMILY YjeF N-terminal domain-like 84 312 IPR036652 -
Psa5g1066 539 TIGRFAM pdxH: pyridoxamine 5'-phosphate oxidase 322 539 IPR000659 GO:0004733|GO:0008615|GO:0010181
Psa5g1066 539 PANTHER NAD(P)H-HYDRATE EPIMERASE 78 524 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1066 K23998 - gmx:100795497 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1066 5 82474212 82480211 Psa5g1066 5 82474212 82480211 ECH