Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1012 ATGGGTGGCGCTCACAGTCGCGATGAACTTCTCGACAGTTCCGATTCGGAGTACGAAGAAAGTGAAAACGAAGCAAGTTACGAAGATGCAAACGAAGGAAGTTCAGAGGGAAGAGTCAAAACTCCATCGTCAATCGATGATGTTGATGCAAAACTCAAAGCCCTCAAGCTCAAATACTCCACTAAAAATCCAAACCCTAACAGTGTTAAGCTTTATCTCCACAACTCTGTTGACTCCAAATGGGAGATTTACGAGAAGTTAACCACTTACTCGTTTGTTAAAACTTGTAGTGTTGAGGGAGATAGCGATGATGACGAGGAAGAAGATGATGATGCTGAAAAAGGTTTCTGGGTTTTGAAAGTTGGTTCTAAGATTAGGTCAAAAGTGGGGGCGGAAATGCAGTTGAAAACCCTAGTTGATCAGCGGCGTGTGGATTTTATTGCGAAGGGTGTTTGGGCTATGAGATTCTTCGCGGAACAGCATTATGAAGCCTTTTTGGTTCAGTTTCAGAATTGTACGTTTGAGAATACGTATGGATTTGAAGCAATTGATGAGAACAAGCTTAAGGTTTATGGAAAGGATTTTATTGGGTGGGCGAATCCTGAAGCGGCGGATGATTCCATGTGGGAGGACGCTGATGATAGCTTCTCCAAGAGTCCTGCTTCTGCCACCCCGGTTCGAGCGAGTCAGGATTTGAGGGAAGAGTTTGAGGAGGCGGCAAATGGTGGGATTCAGAGCTTGGCGCTTGGTGCTCTAGACAACAGTTTTCTGGTTGGCGAAAATGGTATTCAGGTTGTGAAGAATTTCGCACAGGGTATACATGGAAAAGGTGCTTTTGTGAATTTTGGTGGTGGTTCTGCATCCGCCTCGAAATTGGTGCAATCTACTCCCAAGAAAACGCTTCTCATGAAAGCTGAAACCAGCATGCTTCTGATGAGTCCATTGAATGAAAGTAAGCTGCGATCAACAGGGCTTCATCAGTTTGATATTGAGACAGGGAAGGTTGTGACAGAATGGAAATTTGGTAAGGATGGCACTGAGATTACAATGAGAGATATCACAAATGATAGTAAAAGTTCTCAGTTAGATCCTTCTGGTTCTACTTTTCTTGGATTGGATGATAATAGGCTTTGTAGGTGGGATATGCGTGACCGTCATGGAATAGTTCAGGATCTTGCTGATTCTAACTCTAATATGAGTACACCTGTTTTGAATTGGGCACAAGGTCATCAATTCTCTAGGGGGACAAACTTTCAATGCTTTGCTACAACTGGTGATGGTTCTGTTGTTGTTGGCTCACTTGATGGAAAGATTCGGCTGTATTCAATTAACTCTATGAGGCAGGCGAAAACCGCATTTCCTGGACTTGGCTCGCCAATTACTCATGTGGATGTTACATTTGATGGAAAATGGATTGTGGGAACAACAGATACTTACTTGGTTGTTATTTGTACTCTCTTTACGGACAAAGATGGAAACAGTAAAACTGGTTTTGCTGGAAGAATGGGAAATAGGATTGCTGCTCCAAGGTTACTCAAGCTAAACCCTCTCGATTCACACTTAGCTGGAGTCAATAATAAGTTTCACAGTGCTCAGTTTTCCTGGGTGACAGAGAACGGGAGGCAGGAGCGACACATAGTAGCTACAGTGGGGAAGTTTAGTGTGATATGGAACTTCCAACAAGTCAAGGACGGTTCTCATGAGTGCTACCGCAGCCAACAGGGTCTAAAGAGCTGCTACTGCTACAAGATAGTCCTCAGGGATGATTCCATTGTTGAGAGCCGATTCATGCACGACAACTTTGCAGTCACTGATTCTCCTGAGGCTCCCTTGGTTATAGCCACCCAAATGAAAGTTAGTTCGTTCAGCTTATCCAACAGGCGATAA 1887 0.4383 MGGAHSRDELLDSSDSEYEESENEASYEDANEGSSEGRVKTPSSIDDVDAKLKALKLKYSTKNPNPNSVKLYLHNSVDSKWEIYEKLTTYSFVKTCSVEGDSDDDEEEDDDAEKGFWVLKVGSKIRSKVGAEMQLKTLVDQRRVDFIAKGVWAMRFFAEQHYEAFLVQFQNCTFENTYGFEAIDENKLKVYGKDFIGWANPEAADDSMWEDADDSFSKSPASATPVRASQDLREEFEEAANGGIQSLALGALDNSFLVGENGIQVVKNFAQGIHGKGAFVNFGGGSASASKLVQSTPKKTLLMKAETSMLLMSPLNESKLRSTGLHQFDIETGKVVTEWKFGKDGTEITMRDITNDSKSSQLDPSGSTFLGLDDNRLCRWDMRDRHGIVQDLADSNSNMSTPVLNWAQGHQFSRGTNFQCFATTGDGSVVVGSLDGKIRLYSINSMRQAKTAFPGLGSPITHVDVTFDGKWIVGTTDTYLVVICTLFTDKDGNSKTGFAGRMGNRIAAPRLLKLNPLDSHLAGVNNKFHSAQFSWVTENGRQERHIVATVGKFSVIWNFQQVKDGSHECYRSQQGLKSCYCYKIVLRDDSIVESRFMHDNFAVTDSPEAPLVIATQMKVSSFSLSNRR* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1012 628 SUPERFAMILY WD40 repeat-like 323 488 IPR036322 GO:0005515
Psa5g1012 628 Gene3D - 307 577 IPR015943 GO:0005515
Psa5g1012 628 MobiDBLite consensus disorder prediction 13 29 - -
Psa5g1012 628 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 27 1 628 IPR040458 -
Psa5g1012 628 MobiDBLite consensus disorder prediction 1 45 - -
Psa5g1012 628 Pfam VID27 C-terminal WD40-like domain 253 571 IPR013863 -
Psa5g1012 628 PANTHER DEM PROTEIN 1 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1012 Psa-Chr5 76148683 76151536 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1012 47 628 Acyl Lipid Metabolism Gene Families AT3G19240 65.378 0.0 788
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1012 - - pop:7494084 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1012 5 76148683 76151536 Psa5g1012 5 76148683 76151536 ECH