Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1011 ATGTTTGCCTCCAATCTGTCTTTGTTTCACTCTCTGTTCCAGAATTCGAATTCTGCAATTGTTATCTTTCGCCAGCTTTTACAATCTAATGCTAATCCCAATGCTTTTACATTTTCATTACTCATCAAAGCTTCCCTTACATCTCCTTCTTTTCTTCATGCTTCATCAACCGCAGCGTTACAAGCACACCAGATTCAAACCCAATCATTGAAACGTGGCATTAACCAATTTATTCATGTAAACACCTCTCTTATTGATTTGTACATGAAACTTGGTTTTGTCTCTCATGCACGCCTCCTGTTTGATGATATGTCTTTTAGAGATGTTGTTTCATGGAACGTGTTGATTTGTGGTTATTCACAAAATGGGTTTCTTTATGATGCTGTTCAAACCTTTGTAGACATGTTAAGAGAGGGTTTTAGACCTAATCAAACTTCGATTGTTAGTTTGCTACCTTCTTGTGGTTGTTTTGAGCTGATTCTTCAAGGTAGGTCTGTTCATGGGTTTGGAATCAAAGCTGGTCTTGGTTGGGATTCTCATTTGAATAATGCACTTATGTCAATGTATGCTAAATGTGATGATTTGAAAGCATCGGAACTCTTGTTTGATGAAATGGATGAGAAGAATGTTGTTTCTTGGAATACGATGATTGGTGCGTATGGCCAGAACAGTCTTTTTGATAAGGCTGTTTTTTGTTTCAAAGAGATGATGAAGGAAGGTTTCCAACCTAGTTCAGTGACGATTATGAACCTTGTGTCTGCAAATGCTCTTCCGGAAACTGTTCATTGTTATGTTGTCAAATGTGGCTTTGACAATGATGCTTCTGTTGTTACTTCGCTTGTTTGTCTATATGCAAAGCAAGGGTTCACATATATGGCAAAACAGCTTTATGAATCCTATCCCACGAAAAACTTGATTTCGTTAACTGCGATAATCTCTAGCTATGCTGAAAAAGGTGATATAGAGTCCGCGGTTGAGTGTTTTATCCAAACTATGAAGTTAGATATAAAACCAGATGCAGTTGCCTTGATTGGTGTACTTCATGGAATTACATGTCCTTCACATTTTTTTATTGGATGTGCTTTCCACGGTTATGGGGTAAAGAGCGGGTTGTTTAATGATTGTTTAGCTGCAAATGGGCTAATAAGTTTGTATTCTAGATTTGACGAGATAGAAACGGCTTTGTCTTTGTTTTATGATATGAGAGAAAAACCACTGATCACATGGAATTCTATGATATCTGGCTGTGTGCAGGCTGGAAAGTCAAGTGATGCCATGGAGTTGTTCTCCCAAATGAACATCTGTGGACAAAAACCAGATGCCGTTACTGTCGCCAGTCTACTATCTGGGTGTTGCCAGCTTGGTTACCTGCGGATTGGAGAGACGTTGCATAGTTATATTCTGAGGAACAATGTGAGAGTGGAAGATTTTACAGCAACTGCTCTAATAGACATGTATAGCAAGTGTGGAAGATTAGATTATGCTGAAAAGGTATTTTATAGCATCAAGGTTCCGTGTTTGGCAACATGGAACTCCATCATATCAGGTTATAGTTTATATGGACTTGTGCATAAAGCTTTCAATTGTTATTCTAAACTACAAGAACAAGGACTAGAACCAGATAAAATCACCTTCTTGGGTGTTTTGGCAGCATGCACACATGGAGGACTTGTCTATTTAGGATTAGAGTACTTCACTATCATGACAGAAGAGTACGGTTTGATACCGAGTCTGCAACATTATGCATGCATAGTCGCTCTATTAGGTAGAGAAGGCTTGTTCGAGGAAGCAATTGAATTTATAAATAGCATGGAGGTTCGGCCTGATTCTGCTGTCTGGGGTGCTCTGTTAAGTGCTTGTTGCATACAACAAGAGGTGAAGCTTGGGGAATGCTTGGCGAAAAATATGTTTTTATTGAATTATAAAAATGGCGGTCTTTATGTATTAATGTCAAATCTGTATGCCATTGTTGGGAGATGGGATGATGTAGCAAGAGTGAGGGAAATGATGAGAGATAGTGGAGGAGATGGATGTTCAGGTGTTAGTGTTATTAATGTGACTTCTGTTAAAGACTCTAATAGCATCTTAAACCTAAGTGATGTCTATTTGAATACAAGCACTTGGCAGCATTTGTGTTTATATTGA 2145 0.3841 MFASNLSLFHSLFQNSNSAIVIFRQLLQSNANPNAFTFSLLIKASLTSPSFLHASSTAALQAHQIQTQSLKRGINQFIHVNTSLIDLYMKLGFVSHARLLFDDMSFRDVVSWNVLICGYSQNGFLYDAVQTFVDMLREGFRPNQTSIVSLLPSCGCFELILQGRSVHGFGIKAGLGWDSHLNNALMSMYAKCDDLKASELLFDEMDEKNVVSWNTMIGAYGQNSLFDKAVFCFKEMMKEGFQPSSVTIMNLVSANALPETVHCYVVKCGFDNDASVVTSLVCLYAKQGFTYMAKQLYESYPTKNLISLTAIISSYAEKGDIESAVECFIQTMKLDIKPDAVALIGVLHGITCPSHFFIGCAFHGYGVKSGLFNDCLAANGLISLYSRFDEIETALSLFYDMREKPLITWNSMISGCVQAGKSSDAMELFSQMNICGQKPDAVTVASLLSGCCQLGYLRIGETLHSYILRNNVRVEDFTATALIDMYSKCGRLDYAEKVFYSIKVPCLATWNSIISGYSLYGLVHKAFNCYSKLQEQGLEPDKITFLGVLAACTHGGLVYLGLEYFTIMTEEYGLIPSLQHYACIVALLGREGLFEEAIEFINSMEVRPDSAVWGALLSACCIQQEVKLGECLAKNMFLLNYKNGGLYVLMSNLYAIVGRWDDVARVREMMRDSGGDGCSGVSVINVTSVKDSNSILNLSDVYLNTSTWQHLCLY* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1011 714 Gene3D Tetratricopeptide repeat domain 263 353 IPR011990 GO:0005515
Psa5g1011 714 Gene3D Tetratricopeptide repeat domain 169 262 IPR011990 GO:0005515
Psa5g1011 714 Pfam PPR repeat 583 606 IPR002885 -
Psa5g1011 714 Pfam PPR repeat 307 330 IPR002885 -
Psa5g1011 714 Pfam PPR repeat 379 404 IPR002885 -
Psa5g1011 714 Pfam PPR repeat 82 105 IPR002885 -
Psa5g1011 714 Pfam PPR repeat 478 503 IPR002885 -
Psa5g1011 714 TIGRFAM PPR: pentatricopeptide repeat domain 211 244 IPR002885 -
Psa5g1011 714 TIGRFAM PPR: pentatricopeptide repeat domain 407 440 IPR002885 -
Psa5g1011 714 TIGRFAM PPR: pentatricopeptide repeat domain 509 541 IPR002885 -
Psa5g1011 714 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Psa5g1011 714 TIGRFAM PPR: pentatricopeptide repeat domain 110 143 IPR002885 -
Psa5g1011 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Psa5g1011 714 Pfam PPR repeat family 107 152 IPR002885 -
Psa5g1011 714 Pfam PPR repeat family 407 453 IPR002885 -
Psa5g1011 714 Pfam PPR repeat family 208 248 IPR002885 -
Psa5g1011 714 Pfam PPR repeat family 505 552 IPR002885 -
Psa5g1011 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Psa5g1011 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Psa5g1011 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Psa5g1011 714 Gene3D Tetratricopeptide repeat domain 505 696 IPR011990 GO:0005515
Psa5g1011 714 Gene3D Tetratricopeptide repeat domain 12 164 IPR011990 GO:0005515
Psa5g1011 714 Gene3D Tetratricopeptide repeat domain 359 504 IPR011990 GO:0005515
Psa5g1011 714 Pfam E motif 625 684 IPR046848 -
Psa5g1011 714 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 201 298 - -
Psa5g1011 714 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 297 713 - -
Psa5g1011 714 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 42 207 - -
Psa5g1011 714 PANTHER OS07G0578800 PROTEIN-RELATED 42 207 IPR045215 GO:0003723|GO:0009451
Psa5g1011 714 PANTHER OS07G0578800 PROTEIN-RELATED 201 298 IPR045215 GO:0003723|GO:0009451
Psa5g1011 714 PANTHER OS07G0578800 PROTEIN-RELATED 297 713 IPR045215 GO:0003723|GO:0009451
Psa5g1011 714 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1011 Psa-Chr5 76137762 76141030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1011 34 683 Glycoside Hydrolase AT3G49170 29.552 2.08e-93 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1011 - - gmx:100787089 1149.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1011 5 76137762 76141030 Psa5g1011 5 76137762 76141030 ECH