Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0946 ATGGGAAGTTCGAAAACAAGCAGTGATGTTTCCGATAGCAGTAGCTCTCAAACCGAAATCGAAAACCATGTTTCCGCTTCTCCCTACGCTGAAGGAGAGAAAGTGCTTGCTTTCCACACTACATGTCTTTATGAAGCCAAGGTTAAGCAAATTGAGTACAAGCATAAACAATGGAGATTCTTTCTTCATTATCTTGGATGGAAGAAAAGTTGGGATGAATGGGTTGTTATTGATCGTTTGATGAAACATACTGAGGAAAATATGCGGGTAAAACTTTCAATTGATGCGGAATTTGGCAATGAAAAGAATGCGAGAAAGCCCCGCGCTTCGTCCAAGGCTTCTAATGTAGCAAGAGGCAGGAAAAGAAAGAATGATTCTCTGGTTAAGGAAAAAACTGTGGTTCTTCCTGATAAACTTGTCAACTTTCAGATTCCACCAACACTAAGGAAGCAATTAGTTGATGATTTTGAGTTTATTACTCATCTTGGCAAGCTTGTTAAGCTTCCACGTACTCCTAATGTGAACGATATATTCAAGACTTATTTTGATTACAGATTGAAGAAAAGTGGACCGATAGCTGATTCGGTTGAAGAAATTATGAAAGGACTGTGTTGTTACTTCGACAAAGCGCTGCCAGTGATGCTCTTGTACAATAATGAGCGTCAGCAGTACCAAGAAGCTTGTCCAAATGATATTGTTCCTTCTGCTATATACGGTGCCGAGCATTTGTTACGTCTCTTTGTTAAATTGCCAGAGTTATTATTCCATGCTAACATTGAAGGCGATACATTGGCAGAACTCCAGGCACAAATACTTGACTTTCTCAGGTTCTTGCGAAAAAATCAGAGAGCATTTTTCCTTTCTTCTTATCATGTCCAGGAAGATGTTGAGAACAGCAGCGACAAACGCTTTTGTGTTACACATAATATCACATAG 936 0.3942 MGSSKTSSDVSDSSSSQTEIENHVSASPYAEGEKVLAFHTTCLYEAKVKQIEYKHKQWRFFLHYLGWKKSWDEWVVIDRLMKHTEENMRVKLSIDAEFGNEKNARKPRASSKASNVARGRKRKNDSLVKEKTVVLPDKLVNFQIPPTLRKQLVDDFEFITHLGKLVKLPRTPNVNDIFKTYFDYRLKKSGPIADSVEEIMKGLCCYFDKALPVMLLYNNERQQYQEACPNDIVPSAIYGAEHLLRLFVKLPELLFHANIEGDTLAELQAQILDFLRFLRKNQRAFFLSSYHVQEDVENSSDKRFCVTHNIT* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0946 311 SUPERFAMILY Chromo domain-like 27 160 IPR016197 -
Psa5g0946 311 PIRSF EAF3_MRG15 23 303 IPR008676 GO:0005634|GO:0006325|GO:0006355
Psa5g0946 311 CDD CBD_MSL3_like 33 89 - -
Psa5g0946 311 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 1 303 IPR008676 GO:0005634|GO:0006325|GO:0006355
Psa5g0946 311 MobiDBLite consensus disorder prediction 1 24 - -
Psa5g0946 311 Gene3D MRG domain 134 303 IPR038217 -
Psa5g0946 311 MobiDBLite consensus disorder prediction 101 124 - -
Psa5g0946 311 Gene3D - 12 111 - -
Psa5g0946 311 MobiDBLite consensus disorder prediction 1 26 - -
Psa5g0946 311 Pfam RNA binding activity-knot of a chromodomain 31 80 IPR025995 -
Psa5g0946 311 Pfam MRG 122 290 IPR026541 -
Psa5g0946 311 PANTHER CHROMATIN-BINDING PROTEIN 1 303 - -
Psa5g0946 311 ProSiteProfiles MRG domain profile. 136 305 IPR026541 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0946 Psa-Chr5 72625504 72630241 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0946 K11339 - gmx:100777259 435.261
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0946 5 72625504 72630241 Psa5g0946 5 72625504 72630241 ECH