Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0929 ATGAAACGATTCAATCCCGAGTCCATTGACGACGACTCAGTTTCTTTTTCACCTCAATCAACGTTTCTTCGACGCGTTTCGTCGATGAATCAATATCAAACCCAAACACTCAACCTCAACGTTAACCAGAACCAAAACCCCTCTGTTGATCATCGTCGATTTCTGCCTCAATTCCAAAACCCTTACAATGACAATCAAACCCTAGAAGATGCTTTTTCTCGCCTTTCTCTTGGTAATCCGTCCAATGGTTACGGTGCTTCTTCTTTTCAAGATTCTCCTTACTATAACCATGGGTTTCAGGCTACTAATTGCTGTCAGAATCATGAAACCGCTGTTGGTTTCAATGGTGCTGGTTATGGTCGAGGTAGACCTTTGATCATGTCTGAAATGGATCGTGTCAAGTATAATCAAATTGAGTTTTTGTGGAGGCAAAATGGTTATGGTTATGGTTATGATAATAGTAATGGTTATGGTTATGGGAATGGGAATGGGAATGGGAATGTTAACAATCTTTTGAATGGGGGTGGTTCTGTTGCTGGTAATGGTAATGGTGGTGGTAATGAATTGGGTCGAAGATTTCAATATGGTTTATTGAATGAATCCTCTGCGCCTTGGCTCAATGTCAATGGTATTGTTAATGATAATGGAAGGAGATCACATTGGTTTGATCGAATTCGTGGGATGGTTTATTTAATGGCTAAGGATCAAAATGGAAGTATGATTTTGGGGGAATTGATGGAAAATTTTGGAAGAGAAGCTGTTTCATATATTTTCACGGAGGTGATTGATTATGTGTCTGAGTTGATGATTGATCCATTTGGTAATATTGTTATCCAAAAGATGGTAGGATTGTGTAACGAAAATCAACTGACTCGGATTGTTCTAATGGTCACTAGCTATGAATGTCAGCTCGTTAGAATTTCTGTTGATCTTCATGGATTTCGTTCTGTTGAGAAAGTGTGTGAGAATGCTACCACTAGAGATCAAAGGATTCTTATTATGTCAGCTTTCAATCCTGCTGCTATTTTGTTGTCTAAGGATGTTAATGGGCATCGTGTGGCTCTCTCTTGTTTGAGAAATTTCCCACATGAAGATACTAAGATATTCCTGAGTATTCTTGCATCTAACTCTCTGTCGATTGCAAGAGACAAGACTGGATGTTGCGTGATGCAGTATTGCGCTAGCCATGCTCAAGGAGAAACTAAGAATCGGCTGATTGATGACATCATACTAAATGCTCCACTATTAGCAGAAGATTGTTATGGCAACTATGTGCTTCAACATCTACTATCTATGAAAATACAGAGAGTCTCAAGCAACCTACACAGACAACTTGAAGGACGGTTTGTATATCTTTCTTGCAATAAGTATGGGAGTAATGTAGTGGAAAAGTTTTTCCACGACGCAGGTGTACATCTATCTGAAAAAATCATTGCTGAGCTGCTTAACTCTCCAAATGTATCAAGGCTCCTTGTCGATCCATTTGGAAATTATGTCATCTGTACAGCACTGGTGAAATTTAAGGGTAATCCCTACCTTAAGAATGCCCTGCTGGATCTGATCCAAGCAAATTCTCTAATGATGCGCAGCAATATGTTTGGCAAAAAGTTGCTTGATAAGGCCGACAAAGAATTGCGGAATATATAA 1647 0.3922 MKRFNPESIDDDSVSFSPQSTFLRRVSSMNQYQTQTLNLNVNQNQNPSVDHRRFLPQFQNPYNDNQTLEDAFSRLSLGNPSNGYGASSFQDSPYYNHGFQATNCCQNHETAVGFNGAGYGRGRPLIMSEMDRVKYNQIEFLWRQNGYGYGYDNSNGYGYGNGNGNGNVNNLLNGGGSVAGNGNGGGNELGRRFQYGLLNESSAPWLNVNGIVNDNGRRSHWFDRIRGMVYLMAKDQNGSMILGELMENFGREAVSYIFTEVIDYVSELMIDPFGNIVIQKMVGLCNENQLTRIVLMVTSYECQLVRISVDLHGFRSVEKVCENATTRDQRILIMSAFNPAAILLSKDVNGHRVALSCLRNFPHEDTKIFLSILASNSLSIARDKTGCCVMQYCASHAQGETKNRLIDDIILNAPLLAEDCYGNYVLQHLLSMKIQRVSSNLHRQLEGRFVYLSCNKYGSNVVEKFFHDAGVHLSEKIIAELLNSPNVSRLLVDPFGNYVICTALVKFKGNPYLKNALLDLIQANSLMMRSNMFGKKLLDKADKELRNI* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0929 548 Gene3D - 212 547 IPR011989 -
Psa5g0929 548 ProSiteProfiles Pumilio RNA-binding repeat profile. 371 407 IPR001313 GO:0003723
Psa5g0929 548 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 200 545 IPR033133 GO:0003723
Psa5g0929 548 ProSiteProfiles Pumilio RNA-binding repeat profile. 444 479 IPR001313 GO:0003723
Psa5g0929 548 PANTHER PUMILIO HOMOLOG 15 112 539 - -
Psa5g0929 548 ProSiteProfiles Pumilio RNA-binding repeat profile. 260 295 IPR001313 GO:0003723
Psa5g0929 548 SMART pum_5 482 519 IPR001313 GO:0003723
Psa5g0929 548 SMART pum_5 260 295 IPR001313 GO:0003723
Psa5g0929 548 SMART pum_5 408 443 IPR001313 GO:0003723
Psa5g0929 548 SMART pum_5 299 335 IPR001313 GO:0003723
Psa5g0929 548 SMART pum_5 336 371 IPR001313 GO:0003723
Psa5g0929 548 SMART pum_5 444 479 IPR001313 GO:0003723
Psa5g0929 548 SMART pum_5 372 407 IPR001313 GO:0003723
Psa5g0929 548 Pfam Pumilio-family RNA binding repeat 416 430 IPR001313 GO:0003723
Psa5g0929 548 Pfam Pumilio-family RNA binding repeat 303 333 IPR001313 GO:0003723
Psa5g0929 548 Pfam Pumilio-family RNA binding repeat 378 410 IPR001313 GO:0003723
Psa5g0929 548 Pfam Pumilio-family RNA binding repeat 448 482 IPR001313 GO:0003723
Psa5g0929 548 Pfam Pumilio-family RNA binding repeat 265 294 IPR001313 GO:0003723
Psa5g0929 548 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 112 539 - -
Psa5g0929 548 SUPERFAMILY ARM repeat 221 541 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0929 Psa-Chr5 71536666 71540246 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0929 - - mtr:MTR_3g102650 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0929 5 71536666 71540246 Psa5g0929 5 71536666 71540246 ECH