Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0889 ATGGACCCATCTATAGTCAAGCTTCTTGAAGATGATGAGGATGAGACTATGCATTCAGGAGCAGATGTGGAAGCGTTCCAAGCTGCATTGAATAGAGACATAGGCGGAGATGCTTCTAATGCTCAGCTTTCTGATTCAGATGCAGGAAGCAATAATTCATTCAGTCAATCATTACCAACGTGGCCAACTTCTAGCCATGACAACCAGACTGACTGTCAAACTCAGGAGCCTAAAATCGCCCAAGAGCAACCTTCATCTGAAATGGAGCTGAAGCAAGAAGGACCTGTCGTGGAACAGATGCAAAACGTTACCTCTCAAGATGCAAGTAATCCTACTTTATCACACAAACAATCTCAAGACGAATGTCTCCAACGCCAGACTGTACCAGTTTCCCACCAACATGCTCAAACAAATGAAGTTCAAAAATCTGAAAAAGATCCTGTCTTTAACCATGAGGTAATAAAAACAAATAATCCCAACTGTGAATCTCAGTATGCAAAATTGCAGCAGATGAGTAATCAACAGGCCACAGTAAATGAACAACCTAGTAGCCAAATCAATCGTAGTAAGCAGGTGCCATTTGGCTTATTGCTCCCTATCTTGATTCCCCAACTTGCCAAAGATAGAGCCATGCAACTTCAAACATTATTTAACAAATTGAAGAGAGATGAAATACCCAAAGACCATTTTGTACGGCTTATGAAAGGGATTGTGGGGGATCAGATGCTTAGAATAGCATTGACAAAAGTGCAACAACAAACAAAAGCCAATGCAGGTTCTTCTGGACAGCAGCACCCTGTAAGGATGCCAACGGTTACTTCCAGTGGAACAAAATTTAATGATCCCCATGCGTTAGCACAACTGCATCAGAGAAGTATGAATGCTACTGCAGATCATTCTCATAATACTTCTTCAGCTATCCAAGTGAAAAGTGAACCGACCTATTCAACTATGGACATTAGTGCTAAAAAATCTCAGGAACATGATGTTCGAGTAGTGCAACCAAATCAATTACCATCATCAGGTTCTAATGCTGTCAGTCAAGAAACTGAAAGATCCTCAGTTCACATACAAGGCCTTAATAAGCAGCAACAGCAGCATATACATTTCCCATCGACATATGGAAGCAGTGGTGGTAACTATAACCATTTTTCCGGGACAACTACTGGTTCATCATCTCTCAGACCACAACCTCATCCTCATGATTCACACATAAGGCAAATTCCACATCAGAATATTGGTCTAAATCACTTAGGTGTAGAACGACAAAGTTCCTTCACTGATCCTAAGAGAATGCCAGGTGGATCTGTGTCGGCTGGTGTAAACAATACAGCACCACAACAAACTTCAACTTCTTGGCAACCTTCAGCAGAACAAAATTCTGGCTTGTTTTCATCTGTTTCATATGTAAAAAAGGAACCTAACGACCTTTCTATTGAGCAGCAACATAGGCATCATTTATCTAAATTGCAGGGGTTGCCTTCTGTTAATTCCGGTCAAACTGAACAGGGTAGCGGTGTCAATCAAGGCACTGTAAAGGATGAGTTTTCAAGAGGTTCTTTAGCACTCACTAGCTTACCACCTACAACATCTGCTAGCTTGCTCGCAACAAGCTCTGTATCTCAACTAGATCCAACTGGCTCTTTTATTTCTCAGATCCCAGCTAGCACTTCTGCTATGGTGTCTAAGGCACCTCTAAAAAGACCTCTTGGCCAGAAGAAACCGCTTGAAACACTTGGTTCTTCACCTCCTCCTCCAAGTAAGAAACAAAAGGTGTCTGGGTCATCTCTGGAACAAAGCATTGAACAGCTTAATGATGTTACAGCTGTTAGTGGTGTTGATCTTAGGGAGGAGGAAGAGCAGTTATTTTCTGGGTCCAAAGAGGACAGTCGAGCTTCAGAAGCATCTCGAAGAGTTGTGCAAGAAGAGGAAGAAAGTCTGATTTTGCTGAAAGCTCCATTGCAGAGAAAATTGATTGAAATTATGACCGAGTGTGGCTTGAAAGGCATGGGTAATGATGTGGAAAAATGCTTGTCACTGTGTGTTGAAGAGCGAATGCGCGGAGTAATAAGTAACATAATCAGAATGTCAAAACAGAGGGTTGATATTGAGAAAACTAGGCATCGAACTGTTGTCACTTCAGATGTTCGACAGCAAATCATGGCAATGAATAGGAAAGCAAGGGAAGAGTGGGAGAAAAAACAGGCCGAAGTAGACAAGCTCCGGAAACTAAATGATGTAGATGGTGGTTCCGGAGTTGATGGCGACAAGGAGAAGGATGATGGTCGCAATAAAGCAACAAAGGTGAACAAGGAAGTAGATGACAAAATGAGGACAAATGCTGCAAATGTTGCAGCCCGAGCTGCTGTTGGGGGAGACGACATGCTGTCAAAGTGGCAACTTATGGCTGAGCAAGCCAGGCAGAAACGTGAAGGGGGAACAGACACTGCATCTGGTTCTCAGCCAACCAAAGATGTCAGCCGCAAATCTTCACCATCATCAGGAAGGAGCACAAAAGACGGTCAAGAAAGGGAGAGAAAAGGTCCAAATTCTCTTGGGAACTCAGCATCTGGTAGGAAATTTGGGAAAAATAATTCCCCTGGATCTCATACTCGCATAGCTCGTAGCATCTCTGTGAAGGATGTGATTGCAGTCTTGGAGAGGGAACCTCAGATGTCCAAATCATCACTCTTATATCGATTGCATGAGAGAATTCATTCTGATACTTCAATCGAATAA 2739 0.4264 MDPSIVKLLEDDEDETMHSGADVEAFQAALNRDIGGDASNAQLSDSDAGSNNSFSQSLPTWPTSSHDNQTDCQTQEPKIAQEQPSSEMELKQEGPVVEQMQNVTSQDASNPTLSHKQSQDECLQRQTVPVSHQHAQTNEVQKSEKDPVFNHEVIKTNNPNCESQYAKLQQMSNQQATVNEQPSSQINRSKQVPFGLLLPILIPQLAKDRAMQLQTLFNKLKRDEIPKDHFVRLMKGIVGDQMLRIALTKVQQQTKANAGSSGQQHPVRMPTVTSSGTKFNDPHALAQLHQRSMNATADHSHNTSSAIQVKSEPTYSTMDISAKKSQEHDVRVVQPNQLPSSGSNAVSQETERSSVHIQGLNKQQQQHIHFPSTYGSSGGNYNHFSGTTTGSSSLRPQPHPHDSHIRQIPHQNIGLNHLGVERQSSFTDPKRMPGGSVSAGVNNTAPQQTSTSWQPSAEQNSGLFSSVSYVKKEPNDLSIEQQHRHHLSKLQGLPSVNSGQTEQGSGVNQGTVKDEFSRGSLALTSLPPTTSASLLATSSVSQLDPTGSFISQIPASTSAMVSKAPLKRPLGQKKPLETLGSSPPPPSKKQKVSGSSLEQSIEQLNDVTAVSGVDLREEEEQLFSGSKEDSRASEASRRVVQEEEESLILLKAPLQRKLIEIMTECGLKGMGNDVEKCLSLCVEERMRGVISNIIRMSKQRVDIEKTRHRTVVTSDVRQQIMAMNRKAREEWEKKQAEVDKLRKLNDVDGGSGVDGDKEKDDGRNKATKVNKEVDDKMRTNAANVAARAAVGGDDMLSKWQLMAEQARQKREGGTDTASGSQPTKDVSRKSSPSSGRSTKDGQERERKGPNSLGNSASGRKFGKNNSPGSHTRIARSISVKDVIAVLEREPQMSKSSLLYRLHERIHSDTSIE* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0889 912 MobiDBLite consensus disorder prediction 558 598 - -
Psa5g0889 912 MobiDBLite consensus disorder prediction 618 638 - -
Psa5g0889 912 MobiDBLite consensus disorder prediction 37 88 - -
Psa5g0889 912 Pfam RCD1-SRO-TAF4 (RST) plant domain 188 252 IPR022003 -
Psa5g0889 912 MobiDBLite consensus disorder prediction 334 367 - -
Psa5g0889 912 Pfam Transcription initiation factor TFIID component TAF4 family 604 901 IPR007900 GO:0005669|GO:0006352
Psa5g0889 912 MobiDBLite consensus disorder prediction 491 508 - -
Psa5g0889 912 Coils Coil 724 744 - -
Psa5g0889 912 MobiDBLite consensus disorder prediction 803 878 - -
Psa5g0889 912 MobiDBLite consensus disorder prediction 583 598 - -
Psa5g0889 912 ProSiteProfiles RST domain profile. 185 256 IPR022003 -
Psa5g0889 912 CDD TAF4 599 900 IPR007900 GO:0005669|GO:0006352
Psa5g0889 912 MobiDBLite consensus disorder prediction 742 775 - -
Psa5g0889 912 MobiDBLite consensus disorder prediction 97 137 - -
Psa5g0889 912 MobiDBLite consensus disorder prediction 478 508 - -
Psa5g0889 912 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 41 353 IPR045144 GO:0005669|GO:0006352
Psa5g0889 912 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 348 906 IPR045144 GO:0005669|GO:0006352
Psa5g0889 912 MobiDBLite consensus disorder prediction 848 873 - -
Psa5g0889 912 PANTHER IP01149P-RELATED 348 906 - -
Psa5g0889 912 PANTHER IP01149P-RELATED 41 353 - -
Psa5g0889 912 MobiDBLite consensus disorder prediction 812 837 - -
Psa5g0889 912 MobiDBLite consensus disorder prediction 37 144 - -
Psa5g0889 912 Gene3D Histone, subunit A 649 694 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0889 Psa-Chr5 69667406 69678084 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0889 K03129 - gmx:100797127 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0889 5 69667406 69678084 Psa5g0889 5 69667406 69678084 ECH