Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0842 ATGGATTCTTCTCAAGGTTCGAAGTTGGCTGGTTTGGTGCAAAATGCATCCATTAAGAGGGATGGATCTAGTTTGGATCGTGTTCCTGTTTATGTTAAGGAGTTGATTGCTGGTGGATTCGCTGGTGCGCTTTCTAAGAGCTCTGTTGCACCTCTAGAACGGGTCAAGATTCTCTGGCAGACTAGAACTGGAGGATTCCATAATCTTGGTGTTTACCAATCTATGAATAAGTTGCTAAAGCATGAAGGGTTTCTAGGATTATATAAAGGAAATGGAGCTAGTGTTATCCGGATTGTTCCATATGCTGCCTTACATTTTATGACATATGAGCGGTATAAAAGTTGGATCCTTAACAATTACCCCATTTTAGGAACAGGTCCTTCTATTGATCTTTTAGCTGGCTCGGCAGCAGGGGGAACTTCAGTTTTATGTACGTACCCCTTAGATCTTGCCCGTACCAAACTTGCTTATCAGGTGGTGGACACAAAAGTATGTATCAAAGATGGTATTAAAGGAGTTCATTCTCAACCTACAGGTCCTGTACATAATGGGATTAAAGGTGTACTTACGAGTGCCTATAAGGAAGCTGGAGTTCGTGGACTTTATAGAGGTGTAGGTCCTACACTCACTGGAATTCTTCCCTATGCTGGTTTGAAGTTCTATACTTATGAGAAATTGAAGATGCATGTTCCTGAAGAACATCAGAAGTCCATTTTGATGCGCCTTTCTTGTGGAGCTCTTGCTGGATTGTTTGGGCAGACTTTAACGTACCCTTTGGATGTTGTTAAGCGACAAATGCAGGTTGGGAGCTTGCAAAATGCAGCTAACGGAGATGCCCGATACAAGAATACATTAGATGGACTCAGAAAGATTGTTCGAAATCAAGGGTGGAGGCAGTTGTTTGCAGGCGTGAGCATTAACTACATAAGGATTGTTCCTTCAGCTGCAATTAGTTTCACCACATATGACATGATGAAGGCATGGCTTGATGTACCATCCCAACAAAGATCTAAATCAGTTTAG 1023 0.4203 MDSSQGSKLAGLVQNASIKRDGSSLDRVPVYVKELIAGGFAGALSKSSVAPLERVKILWQTRTGGFHNLGVYQSMNKLLKHEGFLGLYKGNGASVIRIVPYAALHFMTYERYKSWILNNYPILGTGPSIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVVDTKVCIKDGIKGVHSQPTGPVHNGIKGVLTSAYKEAGVRGLYRGVGPTLTGILPYAGLKFYTYEKLKMHVPEEHQKSILMRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNAANGDARYKNTLDGLRKIVRNQGWRQLFAGVSINYIRIVPSAAISFTTYDMMKAWLDVPSQQRSKSV* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0842 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 236 328 IPR018108 -
Psa5g0842 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 229 IPR018108 -
Psa5g0842 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 115 IPR018108 -
Psa5g0842 340 Gene3D Mitochondrial carrier domain 28 331 IPR023395 -
Psa5g0842 340 Pfam Mitochondrial carrier protein 129 230 IPR018108 -
Psa5g0842 340 Pfam Mitochondrial carrier protein 31 119 IPR018108 -
Psa5g0842 340 Pfam Mitochondrial carrier protein 236 329 IPR018108 -
Psa5g0842 340 PANTHER GRAVES DISEASE MITOCHONDRIAL SOLUTE CARRIER PROTEIN-LIKE 10 336 - -
Psa5g0842 340 PANTHER SOLUTE CARRIER FAMILY 25 10 336 - -
Psa5g0842 340 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Psa5g0842 340 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Psa5g0842 340 PRINTS Mitochondrial carrier protein signature 90 110 IPR002067 GO:0055085
Psa5g0842 340 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Psa5g0842 340 PRINTS Mitochondrial carrier protein signature 202 220 IPR002067 GO:0055085
Psa5g0842 340 PRINTS Mitochondrial carrier protein signature 245 267 IPR002067 GO:0055085
Psa5g0842 340 SUPERFAMILY Mitochondrial carrier 32 324 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0842 Psa-Chr5 66539492 66551676 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0842 25 311 Organic Solute Cotransporters AT4G26180 55.052 9.13e-114 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0842 - - gmx:100784421 587.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0842 5 66539492 66551676 Psa5g0842 5 66539492 66551676 ECH