Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0824 ATGCGAATCAGAAAGCCAACTCAGAAGAACAAGAAGAATGTCGCCGCCGCCGGCAAAGAAGAAAACGAAGTAAAAACGGCCAAATTGAAGGGTGCAGAGAGGTCAGCATATTTCGCACGGAGAGAAGCAGCAAAGATATTGAGAACTGTACTCGAAGGAGACGCTAACCGCCGTGCTCTTGCTTCCATCAAAACCCTCGTTTATCATCCTTCCGTCAGAAACAAGAAAGCCACATTTGCTCTCATCTGTCAAACCCTCAAACATCTTCCCATTATCAACGATGTTTTGCAAGCTGCCTCTATTCTCAACACCAAGTGGAAGAAGCAACAAGAATTGGTTTATATCATTGTCTATGATATCCTTTTCGGTCAGGGAGTTCCACTGGTTGGTGATGCAGAGAAATACCTCATGCGCCACAAGGACCCCTTACATTTACATCTGAAAAAGGTTTTGTCACGGAAGAATGTGACGACCGTTAAAGAGTTGTTTGCTCTACAAGAGGTTCCTGATGTTTCTGTACCTCGAAATGTTCGTGTGAATACTCTTAAAATGGATGTTGATTCTGCTTTAGTTGAACTTCAGAAAAAATACTCGGTTCAAAAGGATGATTTACTGCCTGACTTACTAGTACTCCCTCCCGGGACTGATTTACACGATCATCCTCTTGTCAAGAATGGAAGCATATTTCTGCAAGGTAAGGCGAGTTCAATGGTGGCACCGGCTCTTAGCCCTGAACCAGGATGGGAGGTTCTTGATGCATGCGCGGCACCAGGCAACAAAACTGTCCACCTTGCCGCCCTTATGAAGAGAAAGGGTAGGATTATAGCATGTGAGCTGAAAAAGGAAAGGATTAAGCGCTTAAATGACACCATAAAGCTATCCGGAGCTTCCAACATACAGGTTCTCAATGAGGATTTCTTGAACATAAATCCCAAGGACCCTTCATATTCTAAGTTAAAAGCTATTCTTTTGGATCCTTCCTGCTCTGGCTCTGGTACTGCCGCTTCTCGACTAGACCATCTGCTTCCATCTAAAGCAGCAGGTGATATTGACACGGAAAGATTGAACAAGCTTGCAGCTTTTCAGAGAAAAGCTCTTCAGCATGCCTTTCTTTTTCCGGCTTTGGAAAGAATTGTATACAGTACATGTTCAATAAACCAAATTGAGAACGAAGATGTAGTGAAGTCTCTTCTGCCCATAGCAGAGTCGTATGGATTCCAACTCGCAAAGCCCTTTCCTGAGTGGCAGTGTCGCGGTCTTCCGGTGTTTGAAGGCTCTGAAAACCTGGTTCGAACAGATCCTGCCAAGCACGGAGAGGGTTTCTTCATTGCCTTGTTTGTCAAGAAAGATGCTAACCTTTCGGCGAGGTCACATAAAAATGATAATAGGACTCTCCACAATTCTACCAGAGCTAGAGCTAGAAACGTGCGAAGGAAGATACCAATGTTCATTCATACTAATATGTTCAAAATGTGGTTACATGGTCAATTGAACCAGCATCAAAATTGGAGGGATAGAAGATAA 1524 0.4377 MRIRKPTQKNKKNVAAAGKEENEVKTAKLKGAERSAYFARREAAKILRTVLEGDANRRALASIKTLVYHPSVRNKKATFALICQTLKHLPIINDVLQAASILNTKWKKQQELVYIIVYDILFGQGVPLVGDAEKYLMRHKDPLHLHLKKVLSRKNVTTVKELFALQEVPDVSVPRNVRVNTLKMDVDSALVELQKKYSVQKDDLLPDLLVLPPGTDLHDHPLVKNGSIFLQGKASSMVAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGRIIACELKKERIKRLNDTIKLSGASNIQVLNEDFLNINPKDPSYSKLKAILLDPSCSGSGTAASRLDHLLPSKAAGDIDTERLNKLAAFQRKALQHAFLFPALERIVYSTCSINQIENEDVVKSLLPIAESYGFQLAKPFPEWQCRGLPVFEGSENLVRTDPAKHGEGFFIALFVKKDANLSARSHKNDNRTLHNSTRARARNVRRKIPMFIHTNMFKMWLHGQLNQHQNWRDRR* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0824 507 Pfam 16S rRNA methyltransferase RsmB/F 241 446 IPR001678 GO:0008168
Psa5g0824 507 PRINTS RNA (C5-cytosine) methyltransferase signature 222 236 IPR023267 GO:0001510
Psa5g0824 507 PRINTS RNA (C5-cytosine) methyltransferase signature 251 261 IPR023267 GO:0001510
Psa5g0824 507 PRINTS RNA (C5-cytosine) methyltransferase signature 320 332 IPR023267 GO:0001510
Psa5g0824 507 PRINTS RNA (C5-cytosine) methyltransferase signature 375 391 IPR023267 GO:0001510
Psa5g0824 507 PRINTS RNA (C5-cytosine) methyltransferase signature 431 448 IPR023267 GO:0001510
Psa5g0824 507 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 16 474 IPR023267 GO:0001510
Psa5g0824 507 Gene3D Sun protein; domain 3 191 230 - -
Psa5g0824 507 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 165 449 IPR001678 GO:0008168
Psa5g0824 507 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 176 449 IPR029063 -
Psa5g0824 507 CDD AdoMet_MTases 250 338 - -
Psa5g0824 507 PANTHER BNAA09G04380D PROTEIN 16 474 - -
Psa5g0824 507 Gene3D Vaccinia Virus protein VP39 231 456 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0824 Psa-Chr5 65569534 65573389 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0824 K15264 - gmx:100811850 764.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0824 5 65569534 65573389 Psa5g0824 5 65569534 65573389 ECH