Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0766 ATGGGTCACGTAGGATCAAGCAAAGACGTTAGCATAGCGGGGCTAGATATGAACGATTTACTCGACGACAACATCGACATGGAAATGGACATTGACCTAGACGAAGATCCATCCAATGCTGAAATCCTCAACGAGCTAGGCGATGATATGGTGAAATATTTCTGCAAAAAAGCTTCCATGATGTTCTTCAACGAGTACGGTTTGATCAGTCACCAGATCAGTTCGTTTAATCAGTTCGTCACTAGCGGACTTCAGAATACCTTCAATTCCTTCGGAGATCTCAGTGTTACTCCTGGTTTTGATCCTTCTAAGAAAGGTGATAGCGAGCATTATCGTTACGCCACGGTTAAGTTTGGTAATGTGACTCTTGATCGACCTAAGTTTTGGTGCGGTGAAAATAATGCTCAGGAGTTGAAGATGCTTCCTAGACATGCTCGTCTTCAGAGGATGACTTATGCTTCCAAAATGAAAGTGAATGTTCACGTTGAGGTATATATTCCGAAGAAGGTTCGGAGTGATAAATTTAAGACTGGAAAAGAGGAGTACATTGATAAAGAGACGGTTATGGAAGAGAGCAGGGAAATAACTATCGGTAGACTGCCCGTTATGGTCAAGTCTAATTTGTGCTGGATGAGTGAAGTTGAAAAAGGTGATTGTGAATTTGACCATGGAGGCTATTTTCTGATCAAGGGTGCTGAGAAGATTTTTATTGCACAGGAGCAAATCTTTTTGAAAAGGCTCTGGGTGACAACTATTCCGTATTGGGCAGTTGCATACAAGTCACAGATGAAGAGAAATAGGATGGTTGTTAAATTAGTGGAAAATTCCACTTTTGAAGGAATCCAAAACGGGGAGAAGCTGCTCACCGTATATTTTCTGTCCGTCGAGGTTCCTGTATGGATATTGTTTTTTGCCCTAGGTGTCTCATCTGATAAAGAGATTGTTGACCTCATCGATTATGGAAAAGGAGATGGAAGAATAGAAAACCTTCTCTTTGCATCCATCCGTGAGGCGGATGAGAAGTGCAAAGCATTCCGAAGGGGAAATAATGCTCTCCTTTTCCTAGAAGAACGTATCAAAGGTGTCCAGTTTCCACCGCCAGAATCTATTAACGAGTGCCTTGACATGTATGTCTTTCCGAACATTAAAGGACTGAAAAGGAAGGCACGCTATCTGGCATACATGGTGAAGGTTCTTTTACTGGCGTATACTGGCCGCCGAAAAACTGATAACAGGGATGACTTTCGAAATAAGAGGCTTGAGTTGGCCAGTGAGCTACTTGAACGTGAGATTAGAGTGCACTTTGCACATGCTCGGAAGCGAATGGCGAAGGCTCTGCAGAGAGACCTCTACGGAGATCGTGATGTTCGTCAAATTGAGCACTATCTTGATGCTTCTATTATTACAAATGGTCTTCAAAGAGCGTTTTCTACTGGAGCGTGGTCACATCCTTTTAAAAGGATGGAAAGGATTTCTGGTGTGGTTGCAACTCTTGGCCGAACTAATCCATTACAAACCATGGCTGAATTAAGAAGAACAAGGCAACATGTTCAGTACACGGGAAAGGTTGGGGATGCTAGATACCCGCATCCTTCTCACTGGGGTAAGGTTTGTTTCCTTTCTACCCCTGATGGGGAAAATTGTGGACTAGTAAAAAATTTGTCTGTCACAGGAGTAGTAAGTACCCATGTAACTGAACCTATACTTCCGCACCTGTTTGATTGTGGAATGGAAGAACTTGTTGATGATACTACCAGTGTTCTTGGAAAAAAAGACAAAGTCTTCCTAAATGGGGACTGGGTTGGAGTTTGTTTGAATTCCGCATCATTTGTGTCAGAGCTACGAAATCGAAGACGGAGAAATGAATTGCCTAATCAGGTTGAAATTAAAAGAGATCAAATTCAAGAAGAAGTGCGCATATTATCTGATGCAGGAAGGATTCTCCGACCGCTCTTGGTTGTTAGTAATCTGCTCAAGATTAAAGAATCTAAGTCGGAGCATAAATCTTTCCAGTCCCTGTTGGATAATGGCGTAATTGAGCTGGTTGGTCCTGAAGAAGAAGAGGACTTCAAGACTGCTTGGGGTGTTCAGTATTTATTTGGCAAAGAGGGAAAATCTTCTGTGAAGTACACGCATTGTGAGCTTGATATGTCGTTCTTATTGGGTATAAGCTGTTCAATGGTTCCATTTGCTAATCATGACCATGCTAGGAGAGTGTTGTACCAATCCCAGAAACATTCCTCACAGGCTATTGGCTTTTCTACGACAAACCCAAATATAAGAGTTGATGCTTTGTCTCACCAGTTATTCTATCCTCAAAGACCGCTATTTCGGACAATGACATCTGATTGTCTTGGAAAACCTGGATATCTAGGTCAAAGTAAAGTTCTTCCAAAGTCTGAATTCTATAATGGGCAGAATGCAATTGTAGCTGTTAATGTACATCTCGGATATAATCAAGAGGATTCCTTGGTGATGAACCGTGCTTCTTTGCAGCGTGGTATGTTCAGATCTGAGCACATCAGGAGTTACAAAGCTGAGATTGAAAATAAGGAATCTTCAGAAAAGAGAAAGAAACCTGAAGACATTGTGAATTTTGGAAAGATACAGAGTAAAATCGGTCGAGTTGATAGCCTTGATGATGACGGCTTTCCATTTGTTGGTGCGAATTTGCAGAGTGGTGATATTATTATTGGGCGGTGTGCCGATTCAGGGACAGACCACAGTATAAAGTTAAAACACACTGAAAGGGGTTATGTTCAAAAGGTTGTGCTGTCCTCAAATGATGAGGGGAAGAATTTTGCTACTGTTTCGTTAAGACAGGTTCGAAGTCCGGTTCTTGGAGATAAGTTCTCTAGTATGCATGGACAAAAGGGTGTTTTAGGATTTCTGGAGTCTCAGGAGAATTTTCCTTTCACTAAACAAGGTATTGTTCCTGATATTGTCATAAATCCGCATGCATTTCCCTCAAGACAAACTCCTGGGCAACTCCTAGAGTCTGCTTTAGGAAAGGGTATTGCTTGTGTTGGCTCATTGAGAAATGCTACCCCTTTCTCCACTCCTTCTGTTGAAGCCATTACCGACCAGCTTCACAGAGCTGGCTTTTCAAGATGGGGAAACGAACGAGTATACAATGGGAGGACTGGTGAGATGGTTCAATCACTAATATTTATGGGCCCAACATTCTACCAGCGACTACACCACATGTCCGAGGACAAAGTGAAGTTCAGGAACACCGGCCCAGTTCACCCGCTAACCCGACAGCCAGTTGCTGACAGGAAGCGATTTGGAGGTATCAAGTTTGGTGAAATGGAGCGTGATTGCCTGATCGCCCATGGTGCATCTTCCAACTTGTATGAACGTCTCTTCACCCTGAGTGATTCGTCTCAGATACACATTTGTAGTAAATGCAAAAATGTTGCGAATGTGATCTTGCGGCCGGTATCTGGTGGCCGGAAAATACGAGGTCCCTATTGCCGATTCTGTGAATCAGCTGATGACATTGTGGTGGCCAGTGTTCCATATGGAGCAAAGTTACTGTCCCAGGAGCTGTTCAGCATGGGCATTAACCTCAAATTTGACACCGAGCTTTGCTAG 3597 0.4284 MGHVGSSKDVSIAGLDMNDLLDDNIDMEMDIDLDEDPSNAEILNELGDDMVKYFCKKASMMFFNEYGLISHQISSFNQFVTSGLQNTFNSFGDLSVTPGFDPSKKGDSEHYRYATVKFGNVTLDRPKFWCGENNAQELKMLPRHARLQRMTYASKMKVNVHVEVYIPKKVRSDKFKTGKEEYIDKETVMEESREITIGRLPVMVKSNLCWMSEVEKGDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVTTIPYWAVAYKSQMKRNRMVVKLVENSTFEGIQNGEKLLTVYFLSVEVPVWILFFALGVSSDKEIVDLIDYGKGDGRIENLLFASIREADEKCKAFRRGNNALLFLEERIKGVQFPPPESINECLDMYVFPNIKGLKRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLELASELLEREIRVHFAHARKRMAKALQRDLYGDRDVRQIEHYLDASIITNGLQRAFSTGAWSHPFKRMERISGVVATLGRTNPLQTMAELRRTRQHVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLSVTGVVSTHVTEPILPHLFDCGMEELVDDTTSVLGKKDKVFLNGDWVGVCLNSASFVSELRNRRRRNELPNQVEIKRDQIQEEVRILSDAGRILRPLLVVSNLLKIKESKSEHKSFQSLLDNGVIELVGPEEEEDFKTAWGVQYLFGKEGKSSVKYTHCELDMSFLLGISCSMVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDALSHQLFYPQRPLFRTMTSDCLGKPGYLGQSKVLPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAEIENKESSEKRKKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQSGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFATVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLESALGKGIACVGSLRNATPFSTPSVEAITDQLHRAGFSRWGNERVYNGRTGEMVQSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASSNLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGAKLLSQELFSMGINLKFDTELC* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0766 1198 Gene3D - 409 642 - -
Psa5g0766 1198 Gene3D - 61 242 - -
Psa5g0766 1198 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 37 1195 IPR015712 GO:0003899|GO:0006351|GO:0032549
Psa5g0766 1198 Gene3D RNA polymerase Rpb2, domain 2 250 408 IPR037034 GO:0003677|GO:0003899|GO:0006351
Psa5g0766 1198 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 37 1195 - -
Psa5g0766 1198 Gene3D - 756 944 IPR014724 GO:0003899
Psa5g0766 1198 Pfam RNA polymerase Rpb2, domain 4 594 654 IPR007646 GO:0003677|GO:0003899|GO:0006351
Psa5g0766 1198 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 50 1195 - -
Psa5g0766 1198 CDD RNA_pol_B_RPB2 68 1194 IPR015712 GO:0003899|GO:0006351|GO:0032549
Psa5g0766 1198 Pfam RNA polymerase Rpb2, domain 2 285 421 IPR007642 GO:0003677|GO:0003899|GO:0006351
Psa5g0766 1198 ProSitePatterns RNA polymerases beta chain signature. 948 960 IPR007121 GO:0003677|GO:0003899|GO:0006351
Psa5g0766 1198 Gene3D - 726 1081 IPR037033 GO:0003677|GO:0003899|GO:0006351
Psa5g0766 1198 Pfam RNA polymerase Rpb2, domain 5 670 716 IPR007647 GO:0006351
Psa5g0766 1198 Pfam RNA polymerase beta subunit 67 457 IPR007644 GO:0003677|GO:0003899|GO:0006351
Psa5g0766 1198 Pfam RNA polymerase Rpb2, domain 3 498 557 IPR007645 GO:0003677|GO:0003899|GO:0006351
Psa5g0766 1198 Gene3D RNA polymerase alpha subunit dimerisation domain 1082 1196 - -
Psa5g0766 1198 Pfam RNA polymerase Rpb2, domain 6 726 1095 IPR007120 GO:0003677|GO:0003899|GO:0006351
Psa5g0766 1198 Pfam RNA polymerase Rpb2, domain 7 1097 1195 IPR007641 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0766 Psa-Chr5 62472952 62479549 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0766 - K16252 gmx:100815934 1995.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0766 5 62472952 62479549 Psa5g0766 5 62472952 62479549 ECH