Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0688 ATGAAACACACTTCATCCGAAGCAGTTCCGTCTCTATCATCCGTACCTTCGTTCACAGACCAATCACAGCCCGCCACGTCATCTTCTTCTTCCTCATCTTCCGCTGCGGCGGCGGAGGACCTTGCAATAGGCTCTCGCGACGGAGGAACCGCTCAGGAGACGGTGGTTGTGGATCGGAAAAACGAGTACTCCGCTGTATGTAGATGGACGGTGAACAATTTTCCCAAAGTAAAAGCTAGGGCACTGTGGAGCAAGTACTTTGAGGTAGGTGGTTACGATTGTCGTCTATTGATATACCCTAAGGGTGATTCGCAGGCTTTACCTGGTTACATCTCCGTTTATCTTCAAATCATGGACCCTCGCGGAACTTCTTCTTCCAAATGGGACTGTTTCGCTAGCTATCGTTTGGCATTTGTGAATGTTGCTGATGATTCGAAAACCGTTCATCGTGATTCTTGGCATAGGTTTACTGCTAAGAAGAAATCACATGGTTGGTGTGATTTTACGGCTGCTTCCACTATTTTTGATCCGAAATTGGGTTATATGTTTAGCAATGATTCTGTATTGATAACTGCTGATATTCTTATTCTTAATGAGTCTGTTAATTTTACACGTGATAACAATGAGGTGCAGTCTTCGGCTTTGTCTTCGTCGTCGTCGATAGCTTCATCAGTTGTTGCAGGTCCTGTTTCTGATGTTTTGAGTGGTAAGTTCACGTGGAAAGTTCATAATTTCAGTTTGTTTAAGGATATGATTAAGACACAGAAGATAATGAGTCCGGTTTTCCCTGCTGGGGAGTGTAATTTAAGGATTAGTGTGTACCAGAGTTCGGTTAATGGTGTTGATTATCTTTCAATGTGTTTGGAAAGTAAGGACACGGATAAGAATGTTGTGTTGTCTGATAGGAGTTGCTGGTGTTTGTTTAGAATGTCTGTTTTGAATCAGAAGCCTGCTACGAATCACATGCACAGGGATTCTTATGGTCGCTTTGCAGCTGATAACAAGAGTGGTGACAATACTAGCTTGGGTTGGAATGATTATATGAAGATGTCTGATTTCGTTGGGACGGATTCAGGGTTTCTGCTGGATGACACTGCTGTTTTTAGTACCTCATTTCATGTGATCAAGGAGTTTAGCAGCTTCTCCAAGAATGGGGCTGTCATTGGTGGGAGAAGTGGAGGTGGTGCCAGGAAGTCAGATGGTCACATTGGAAAGTTCACTTGGAGGATTGAGAATTTCACTAGGTTGAAGGATTTACTGAAAAAGAGGAAAATTACGGGTCTTTGCATTAAGAGTAGAAGGTTTCAGATTGGTAATAGGGACTGTCGTCTTATTGTTTATCCCCGAGGGCAGTCTCAGCCACCGTGCCACCTTTCAGTGTTTCTTGAGGTTACGGATTCAAGAAATTCTTCAAGTGATTGGAGTTGTTTTGTTAATCATCGGTTGTCAGTTGTAAACCAGAGAATGGAGGACAAATCTGTCACCAAGGAATCTCAGAACCGGTACTCTAAAGCTGCAAAGGATTGGGGTTGGCGTGAATTTGTGACGCTTACTAGTCTATTTGATCAAGATTCAGGTTTTCTTGTCCAAGACACTGTCATTTTCTCAGCTGAAGTTCTTATATTGAAAGAGACATCAATAATGCAGGATTTTACTGAGCATGATTCTGAGTTAAACAGCAGCAGTTCCCTTCTTGATAGTTCTGGGAAAAGAAGTTCATTTTCATGGAAAGTGGAAAATTTCCTTTCTTTTAAGGAAATAATGGAGACTCGAAAAATCTACAGTAAATTCTTTCAGGCTGGTGGATGTGAACTTCGAATTGGTGTGTATGAGTCATTTGATACCATATGTATTTATTTGGAGAGTGACCAGGCTGTTGGTAGTGATCCTGATAAAAACTTCTGGGTCAGATACAGAATGGCTGTTGTGAATCAAAAAAATCCAGCCAAGACTGTATGGAAAGAATCTTCTATCTGCACAAAAACTTGGAATAATTCTGTATTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCAGATGCAGGATTTCTTGTCCGTGACACCGTTGTTTTTGTGTGTGAAATATTGGATTGCTGCCCTTGGTTTGACTTTTCAGACTTAGAGGTTTTTGCTTCGGAGGATGATCAGGATGCATTGACAACTGATCCCGATGAACTGATAGACTCTGAAGACAGTGAAGGGATAAGTGGAGACGAGGAAGATATTTTTAGAAATCTTCTTTCCAGAGCTGGATTTCATTTAACTTATGGAGATAATCCTTCACAGCCACAGGTTACTTTAAGAGAGAAACTTTTAATGGATGCTGGTGCAATTGCTGGGTTTTTGACTGGACTTCGGGTGTATCTTGATGATCCTGCAAAAGTAAAGCGTTTGCTTCTGCCTACGAAGCTCGCTGGAAGTTATGATGGGAAGAAGGCCACCAAGGCTGATGAGTCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTCTTACAGCAAGCAATCATTGATTTACTATTGGATATAATGGTTGAGTGCTGCCAGCCTTCTGAAGTGGGCCCTGTTGCTGAATCTGTTGATGAATGCTCAAAGCCTTCTCCAGACAGCAGTGGAACTGCTAGTCCTCTTGAACGTGATAATGAAGATAGAGTAGTGGAGTCTCCGCAAGTTCTTGTCAATGAGAGATTGAATTCTGCTGTCGAAGAAAGCAGTACTACGTCTTCTGTACATAGCTTTGATTTAAATGGGAATGGTATCCAGGAAAAAACTCTTCCTGGACAGCCTACTTGTCCACCAGAAACATGTGCCACTGTTTCAGAAAATGCGTCATTTCGGTCAAAGACCAAGTGGCCAGAGCAGTCTGAGGAGCTCTTAGGTTTGATTGTAAACTCACTAAGAGCTTTGGATGGGGCCGTTCCACAAGGTTGTCCAGAGCCAAGACGGCGACCTCAATCTGCGCAGAAAATTGCTCTTGTATTGGACAAGGCTCCTAAGCATTTGCAAGCAGATCTTGTTGCTTTGGTACCCAAATTGGTTGAGCAATCAGAACACCCATTGGCTGCACATGCACTTCTTGAGCGTCTGCAACAGCCAGATGCTGAACCTTCTTTACGAATGCCTGTTTTTGGGGCTCTTAGTCAATTGGAATGTGGCAGTGAAGTGTGGGAGCGCATACTATTTCAGTCATTTGAGCTTTTGACGGATTCAAATGACGAACCCCTGGTTGCAACAATAGATTTTGTATTCAAAGCAGCATCTCAATGTCAGCACCTCCCCGAAGCAGTTAGGTCTGTTCGTGTCAGGCTGAAAAGTTTAGGTCTTCATGTGTCACCTTGTGTCCTTGACTTTTTGAGTAAGACTATAAATAGTTGGGGTGATGTTGCTGAAACCATATTGAGGGATATTGATTGTGATGAGGATTATGGTGAAAGTTGCACTGCTCTACCGTGTGGGATTTTCTTATTTGGCGAGCCTAGCACTGCTTCTACTGGACTGCACATGATTGATGAGCAGGCTTTTCGTGCTAGTCGTCATTTTTCTGATATTTATATACTATTAGAAATGTTATCTATACCTTGTCTTGCTGTTGAAGCTTCTCAAACATTTGAGAGAGCTGTTGCACGAGGTGCAATAGGTGCTCAGTCTGTAGCCCTGGTATTGGAAAGTCTTCTTTCCCAAAGATTGAACAATAATGCCAGAACCGAAAATTTTCAACATTCAGATGGTGCAACAGAGGAGGATGCCTGTGAGCAATTGGGAGTTCAAAGGGATGATATTACATTAGTTCTTGGTCTCGCTGAAACTTTGGCCCTCTCCAGGGATCTCTGTGTCCAAGAATTTGTGAAACTACTCTACGTGATAATCTTTAAATGGTATGCTAATGAATCTTACCGGGGGAGGATGCTGAAGACGCTTGTTGACCGTGTCACCAGCACTACTGATAATGGTCGCGAAGTAGATTTTGATTTGGATATCTTGGTTACTTTGGTCTGTGAGGAACAGGAATATATTAGGCCTGTTTTGAGTATGATGCGTGGAGTTGCCGAACTTTCAAATATTGATCGAGCTGCTCTGTGGCACCAGTTATGTGCTAGTGAAGATGAAATTATCCGCGTTCGTGAAGAAAGCAAAACTGAGATTTCTAATATGGCTAAGGAAAATGCTATTCTATCTCAAAAGCTGAGTGAATCCGAGGCCACAAACAGTCGTCTCAAGTCCGAAATGAAGGCCGAGGTAGATCGGTTTTCTCGGGAAAAGAAGGATCTAGGAGAACAAATTCACGAAGTTGAGAGTCAGCTTGAATGGCATCGCTCAGAGCGGGATGATGAAATGTTAAAGCTCTCGGCAGAGAAGAAAGTTCTTCATGATCGTTTGCATGATGCAGAGACACAACTTTCTCAGTTGAAGTCTCGGAAACGTGATGAAGTAAAGGTTGTTAATCTCGGATAG 4455 0.4256 MKHTSSEAVPSLSSVPSFTDQSQPATSSSSSSSSAAAAEDLAIGSRDGGTAQETVVVDRKNEYSAVCRWTVNNFPKVKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISVYLQIMDPRGTSSSKWDCFASYRLAFVNVADDSKTVHRDSWHRFTAKKKSHGWCDFTAASTIFDPKLGYMFSNDSVLITADILILNESVNFTRDNNEVQSSALSSSSSIASSVVAGPVSDVLSGKFTWKVHNFSLFKDMIKTQKIMSPVFPAGECNLRISVYQSSVNGVDYLSMCLESKDTDKNVVLSDRSCWCLFRMSVLNQKPATNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGTDSGFLLDDTAVFSTSFHVIKEFSSFSKNGAVIGGRSGGGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNSSSDWSCFVNHRLSVVNQRMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTEHDSELNSSSSLLDSSGKRSSFSWKVENFLSFKEIMETRKIYSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFDFSDLEVFASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLAGSYDGKKATKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVAESVDECSKPSPDSSGTASPLERDNEDRVVESPQVLVNERLNSAVEESSTTSSVHSFDLNGNGIQEKTLPGQPTCPPETCATVSENASFRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQADLVALVPKLVEQSEHPLAAHALLERLQQPDAEPSLRMPVFGALSQLECGSEVWERILFQSFELLTDSNDEPLVATIDFVFKAASQCQHLPEAVRSVRVRLKSLGLHVSPCVLDFLSKTINSWGDVAETILRDIDCDEDYGESCTALPCGIFLFGEPSTASTGLHMIDEQAFRASRHFSDIYILLEMLSIPCLAVEASQTFERAVARGAIGAQSVALVLESLLSQRLNNNARTENFQHSDGATEEDACEQLGVQRDDITLVLGLAETLALSRDLCVQEFVKLLYVIIFKWYANESYRGRMLKTLVDRVTSTTDNGREVDFDLDILVTLVCEEQEYIRPVLSMMRGVAELSNIDRAALWHQLCASEDEIIRVREESKTEISNMAKENAILSQKLSESEATNSRLKSEMKAEVDRFSREKKDLGEQIHEVESQLEWHRSERDDEMLKLSAEKKVLHDRLHDAETQLSQLKSRKRDEVKVVNLG* 1485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0688 1484 ProSiteProfiles MATH/TRAF domain profile. 403 539 IPR002083 GO:0005515
Psa5g0688 1484 CDD MATH 573 695 IPR002083 GO:0005515
Psa5g0688 1484 PANTHER TRAF-LIKE FAMILY PROTEIN 33 1481 - -
Psa5g0688 1484 Coils Coil 1375 1434 - -
Psa5g0688 1484 CDD MATH 236 368 IPR002083 GO:0005515
Psa5g0688 1484 Coils Coil 1453 1473 - -
Psa5g0688 1484 SUPERFAMILY TRAF domain-like 233 378 - -
Psa5g0688 1484 ProSiteProfiles MATH/TRAF domain profile. 235 372 IPR002083 GO:0005515
Psa5g0688 1484 PANTHER TRAF-LIKE FAMILY PROTEIN 33 1481 - -
Psa5g0688 1484 MobiDBLite consensus disorder prediction 859 885 - -
Psa5g0688 1484 ProSiteProfiles MATH/TRAF domain profile. 64 194 IPR002083 GO:0005515
Psa5g0688 1484 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 234 386 IPR008974 GO:0005515
Psa5g0688 1484 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 49 201 IPR008974 GO:0005515
Psa5g0688 1484 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 559 697 IPR008974 GO:0005515
Psa5g0688 1484 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 396 548 IPR008974 GO:0005515
Psa5g0688 1484 ProSiteProfiles MATH/TRAF domain profile. 571 695 IPR002083 GO:0005515
Psa5g0688 1484 CDD MATH 404 539 IPR002083 GO:0005515
Psa5g0688 1484 SMART math_3 408 520 IPR002083 GO:0005515
Psa5g0688 1484 SMART math_3 240 353 IPR002083 GO:0005515
Psa5g0688 1484 SMART math_3 576 676 IPR002083 GO:0005515
Psa5g0688 1484 SMART math_3 66 174 IPR002083 GO:0005515
Psa5g0688 1484 CDD MATH 68 194 IPR002083 GO:0005515
Psa5g0688 1484 Pfam MATH domain 584 691 IPR002083 GO:0005515
Psa5g0688 1484 Pfam MATH domain 72 196 IPR002083 GO:0005515
Psa5g0688 1484 Pfam MATH domain 435 541 IPR002083 GO:0005515
Psa5g0688 1484 SUPERFAMILY TRAF domain-like 572 696 - -
Psa5g0688 1484 MobiDBLite consensus disorder prediction 1 34 - -
Psa5g0688 1484 SUPERFAMILY TRAF domain-like 404 545 - -
Psa5g0688 1484 SUPERFAMILY TRAF domain-like 63 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0688 Psa-Chr5 56326332 56335147 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0688 - - ccaj:109798115 2583.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0688 5 56326332 56335147 Psa5g0688 5 56326332 56335147 ECH