Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0678 ATGGCTTCGAGTACGATTCGGAAGGCGATTGGTGCGGTGAAGGATCAGACGAGTATTGGAATAGCGAAGGTGGCGAGTAATATGGCACCGGAGTTGGAGGTGGCGATTGTGAAGGCGACGAGTCATGATGAGGATCCGGCGAGTGAGAAGTATGTGAGGGAGATTTTGAACTTGATGTCTTATTCTCGTGGTTATGTCAACGCTTGTGTGTTGGCAGTGTCGAAGAGGTTGGGGAAGACGCGTGATTGGATTGTTGCGTTGAAGGCTCTTATACTTGTTCATCGTTTGATGAATGAAGGGACGGTGATTTTTCAGGAGGAGATTTTGTATGCTACTAGGAGGGGGACTAGGCTTTTGAATATGTCGGATTTTAGGGATGAGGCGCATTCTAGCTCTTGGGATCATTCTGCTTTTGTTAGGACGTATGCGATGTATCTTGATCAGCGGCTTGAGTTGATGTTGTTTGATAGGAAGACTAATGTTGGCGGCAGTGGTGGTGGTTCTGGTAGTGGTGGCGGTGGGGATGATAGGTTTGGTGGAAGGGAAAACTTCAGATCGCCGCCGAATGAGTATGAGTATGGAGGTCGAGGGGATGGTGGGAGTGGGATGAGGAAGACGAGGTCGTATGGGGATATGGCTGATGCGGCGGGGCAGGATGATAGAAGGATTGTTACTGTTACTCCTTTGAGGGATATGAAGCCGGAGAGGATTTTTGGTAAGATGGGTCATTTGCAGAATATGGGGATATGGCTGATGCGGCGGGGCAGGATGATAGAAGGATTGTTACTGCCGACTGGGTTGGCTAAGAACAGCAGGATGGTTTTGGTTGCTTTGTATCCGCTAGTTAAGGAGAGCTTTCAGCTGTATGCGGATATATGTGAGGTTTTGGCTGTGTTGCTCGACAAATTCTTTGACATGGAGTACCCTGATTGCGTGAAGGCCTTTGATGCTTATGCAAGTTCAGCTAAACAAATTGACGAACTGATTACCTTTTACAATTGGTGTAAAGATAGTGGTTTAGCAAGATCTTCTGAGTATCCTGAAGTTCAGAGAATTACTAGTAAGTTGCTGGAGACGTTGGAGGAGTTTGTGAGGGATAGGGCCAAGAGGCCTAAAAGTCCAGAGAGGAAAGAGGAAGCTCCCAAAGTTGAAGTACAAGAGGAGGAGCCAGTACCAGATATGAACGAAATCAAGGCACTGCCTCCACCTGAGAATTATACCCCGCCTCCTCCGCCTGTACCGGAGCCTGAACCAAAGCCACAGTTTACGGAAGACTTGATGAATCTGAGAGAGGACGCAGTCACGGCAGACGACCAGGGTAATAAATTTGCTTTGGCACTGTTTGCTGGTGCACCGGCTAATAATGCCAATGGATCATGGGAAGCCTTTCCATCAAATGGACAGCCAGAAGTAACTTCAGCTTGGCAGACCCCTGCTGCAGAACCTGGGAAAGCTGATTGGGAATTGGCGCTGGTAGAAACAGCCAGCAATTTATCAAGGCAGAAAGCAGATTTAGGTGGTGGGCTAGATCCTTTATTGTTGAATGGTATGTATGATCAAGGAATGGTCAGGCAGCACGTCAGCACTTCCCAACTTAGTGGAGGGAGTGCAAGCAGTGTGGCGTTGCCGGGACCGGGAAAGACCACAACACCTGTTTTAGCTCTTCCGGCCCCAGATGGATCTGTGCAGCCAGTTAATCAGGACCCATTCGCTGCATCTTTGAACATTCCACCTCCTTCCTATGTGCAAATGGCCGAAATGGAGAAGAAACAGCAATTGCTTGTGAATGAGCAGCAGCTGTGGCATCAGTATGCAAGGGACGGGATGCAAGGCCAAACTAGCTTGACCAAATTGAACGGTAATGGATACTATGCTGGAGGTCCTATGCCTTATGGAATGCCCCCAGTCCATGGAATGGGGCCTCCAAACGGGTATTACCATACTCCTCTCTGA 1953 0.4864 MASSTIRKAIGAVKDQTSIGIAKVASNMAPELEVAIVKATSHDEDPASEKYVREILNLMSYSRGYVNACVLAVSKRLGKTRDWIVALKALILVHRLMNEGTVIFQEEILYATRRGTRLLNMSDFRDEAHSSSWDHSAFVRTYAMYLDQRLELMLFDRKTNVGGSGGGSGSGGGGDDRFGGRENFRSPPNEYEYGGRGDGGSGMRKTRSYGDMADAAGQDDRRIVTVTPLRDMKPERIFGKMGHLQNMGIWLMRRGRMIEGLLLPTGLAKNSRMVLVALYPLVKESFQLYADICEVLAVLLDKFFDMEYPDCVKAFDAYASSAKQIDELITFYNWCKDSGLARSSEYPEVQRITSKLLETLEEFVRDRAKRPKSPERKEEAPKVEVQEEEPVPDMNEIKALPPPENYTPPPPPVPEPEPKPQFTEDLMNLREDAVTADDQGNKFALALFAGAPANNANGSWEAFPSNGQPEVTSAWQTPAAEPGKADWELALVETASNLSRQKADLGGGLDPLLLNGMYDQGMVRQHVSTSQLSGGSASSVALPGPGKTTTPVLALPAPDGSVQPVNQDPFAASLNIPPPSYVQMAEMEKKQQLLVNEQQLWHQYARDGMQGQTSLTKLNGNGYYAGGPMPYGMPPVHGMGPPNGYYHTPL* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0678 650 ProSiteProfiles ENTH domain profile. 24 160 IPR013809 -
Psa5g0678 650 SUPERFAMILY ENTH/VHS domain 30 151 IPR008942 -
Psa5g0678 650 Gene3D - 3 156 IPR008942 -
Psa5g0678 650 SMART enth_2 30 160 IPR013809 -
Psa5g0678 650 MobiDBLite consensus disorder prediction 367 394 - -
Psa5g0678 650 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 630 IPR045192 GO:0048268|GO:0072583
Psa5g0678 650 SUPERFAMILY GAT-like domain 228 366 - -
Psa5g0678 650 PANTHER ENTH/ANTH/VHS SUPERFAMILY PROTEIN-RELATED 1 630 - -
Psa5g0678 650 MobiDBLite consensus disorder prediction 402 417 - -
Psa5g0678 650 MobiDBLite consensus disorder prediction 367 417 - -
Psa5g0678 650 Gene3D ANTH domain 221 378 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Psa5g0678 650 CDD ANTH_N_AP180_plant 32 152 - -
Psa5g0678 650 Pfam ANTH domain 31 366 IPR011417 GO:0005543
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0678 Psa-Chr5 54715163 54717204 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0678 - - gmx:100787076 976.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0678 5 54715163 54717204 Psa5g0678 5 54715163 54717204 ECH