Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0638 ATGGCTTTGCCGAATCAGCAAACCGTTGATTACCCAAGTTTCAAGCTTGTTATCGTCGGAGACGGTGGCACAGGAAAGACGACATTTGTTAAGAGGCATCTTACCGGAGAATTTGAGAAGAAATATGAACCAACTATTGGTGTTGAAGTGCATCCATTGGATTTCTTCACAAACTGTGGTAAGATTCGTTTCTACTGCTGGGATACTGCTGGTCAAGAGAAGTTTGGTGGTCTCAGAGATGGATACTATATCCACGGGCAATGTGCAATTATAATGTTTGATGTTACTGCTAGACTGACATACAAAAATGTTCCTACCTGGCACCGTGATCTTTGTCGGGTTTGTGAAAACATCCCAATTGTTCTTTGCGGAAACAAGGTTGATGTGAAGAACAGGCAAGTGAAGGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCAATACTATGAGATATCAGCTAAGAGCAACTACAACTTTGAGAAGCCTTTCCTGTATCTTGCCAGGAAACTTGCAGGAGATCCTAATTTGCACTTTGTAGAATCTCCTGCACTGGCTCCACCAGAAGTTCAAATTGATATCGCCTTACAACAAAGGCATGAAAATGAAATTCTCGAAGCTGCTAATCAGCCCCTTCCTGATGACGATGATGATGCATTTGAGTAG 666 0.4219 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0638 221 SMART ras_sub_4 11 174 - -
Psa5g0638 221 CDD Ran 14 179 - -
Psa5g0638 221 Pfam Ras family 15 171 IPR001806 GO:0003924|GO:0005525
Psa5g0638 221 Gene3D - 4 219 IPR027417 -
Psa5g0638 221 SMART rab_sub_5 14 174 - -
Psa5g0638 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 27 41 IPR002041 GO:0003924|GO:0005525|GO:0006913
Psa5g0638 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 74 92 IPR002041 GO:0003924|GO:0005525|GO:0006913
Psa5g0638 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 94 115 IPR002041 GO:0003924|GO:0005525|GO:0006913
Psa5g0638 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 130 148 IPR002041 GO:0003924|GO:0005525|GO:0006913
Psa5g0638 221 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 168 190 IPR002041 GO:0003924|GO:0005525|GO:0006913
Psa5g0638 221 PANTHER GTP-BINDING NUCLEAR PROTEIN 1 221 - -
Psa5g0638 221 ProSiteProfiles small GTPase Ras family profile. 5 205 IPR001806 GO:0003924|GO:0005525
Psa5g0638 221 TIGRFAM small_GTP: small GTP-binding protein domain 14 164 IPR005225 GO:0005525
Psa5g0638 221 ProSiteProfiles small GTPase Ran family profile. 7 171 IPR002041 GO:0003924|GO:0005525|GO:0006913
Psa5g0638 221 ProSiteProfiles small GTPase Rab1 family profile. 8 210 - -
Psa5g0638 221 PANTHER RAN GTPASE 1 221 IPR002041 GO:0003924|GO:0005525|GO:0006913
Psa5g0638 221 SMART rho_sub_3 16 170 IPR001806 GO:0003924|GO:0005525
Psa5g0638 221 SMART ran_sub_2 19 220 - -
Psa5g0638 221 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 193 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0638 Psa-Chr5 50458849 50461623 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0638 K07936 - mnt:21389070 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0638 5 50458849 50461623 Psa5g0638 5 50458849 50461623 ECH