Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0635 ATGGCTACTGTTTCTGCTAGACAACCATTTGGAATCCATTTCCATTCCCAAACCCTAATTCGCAGATTGGATTGCTCAATCTCCCACTTTCCCTTTCACGTAGACCTTTCCAGAATCACCTTGTATTCTTCTTCACAGGGATTAGTTCATCGAGTACGTGCACGGCCTGATATTGATGATTTCTACTGGGAGAAAGCTCCAACGCCCATTCTTGACACAATTGAAAGCCCTCTTTGCTTGAAGAACTTATCCCTTAGGGAGTTGAAACAACTCGCTGCTGAAATCCGTTTAGATTTGTCTTCTGTTTTGTCATGTACACAAATATCCCCAAACCCAAGTATGGCTGTGGCGGAGCTGACAGTTGCAATGCATCATGTTTTCCATGCTCCGGTAGACAAGATACTGTGGGATGTCGGTAATCAAACATATGCACATAAGATGCTAACCGGAAGGAGATCAATGTTGAGGACAATCAGACAAAAGAATGGACTTTCTGGTTTTACTTCTCGATTTGAGAGTGAATATGACTCATTTGGTGCAGGTCATGGATGCAACAGTATATCTGCTGGACTTGGCATGGCAGTTGCACGGGATATTAAAGGGAGACGAGAACGTATAGTTGCAGTTATCAGCAATTGGACCACTATGTCTGGTCAGGTGTATGAGGCAATGGGAAATGCGGGATATTTGGACTCAAATATGGTCGTAATTTTGAATGATAGCCGCCATTCTTTACTCTCCAAAATTGAGGAGGGCCCAAAAACCTCTGTCAATGCCCTATCTAGTACTCTTAGCAGGCTCCAATCCAGTAAATCTTTCCGAAGGTTTAGAGAAGCTGCTAAGGGTGTTACAAAACGTATTGGCAGGGGCATGCATGAATTGGCAGCTAAAGTAGATGAATATGCTCGTGGTATGATGGGTCCACTAGGTTCTACTCTATTTGAAGAGCTTGGGTTGTATTATATAGGGCCAGTGGATGGACACAATATTGAAGATCTCATAAGTGTTCTTCAAGAAGTAGCTTCCCTGGATTCGATGGGTCCTGTCCTGATTCATGTAGTAACGGATGAAAATCAGGTTGAAGAACACAATAATAAAAGCAATATAACAGACAAGCAGCAGGATGATAATGTTAGTTCTGTTTTGTTCAACAATGCTGGTCGGCCTGAAACATATGGCGATTGCTTTGTGGAGTCTTTGGTTGCAGAAGCTGAGAAAGACAAAGATATTGTGGTTGTTCATGCAGGAATCACATCAGAGCCATCACTTGAACTGTTTCGGGAAAAATTTCCAGATAGGATTTTCAATATGGGAGTTGCTGAGCAACACGCAGTCACGTTTGCTTCTGGTCTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTTTTACAAAGAGCCTATGATCAGGTTGTTCATGATGTTGATCAACAGAAAATTCCAGTGCGTTTTGTCATTACAAGTGGAGGATTGGTAGGTTCGGATGGTCCCGTGCAGTGTGGAGCATTTGATATAACGTTCATGTCGTGCTTACCAAACATGATTGTCATGGCACCATCTGACGAGGTTGAACTTGTGAACATGGTGGCTACTGCTACTCGCATTAATGACAGGCCAGTTTGCTTTCGATATCCTAGGGGTGCCTTGGTTAATAAAGGCCACACTATAGATGATGGAGTCCCAATTGAGATTGGAAAGGGAAGAGTTCTTGTTGAAGGTAAAGATGTTGTCTTACTGGGATATGGATCAATGGTTCATAACTGTCTAAATGCTCATTCTCTTCTTGCAAATCTTGGCGTTGAGGTGACTGTTGCGGATGCAAGGTTCTGCAAGCCCCTAGACATCAAGCTTCTGAGGGAGCTTTGTGAACACCATTCTTTTCTAGTTACTGTTGAGGAAGGATCTATTGGAGGATTTGGTTCCCACGTTGCTCAATTTATTGCTCTTGATGGACTTCTTGACCAGAGAATTAAGTGGCGTCCAATTGTCTTACCTGACAGTTACATTGAACATGCAACACCAAATCAACAGCTTGACAAAGCGGGGTTGACGGGACATCACATTGCTGCCACAGCGTTGAGTTTACTGGGCCGTACCCGTGAAGCTCTATCGTTTATGTGCTTTTGA 2136 0.4316 MATVSARQPFGIHFHSQTLIRRLDCSISHFPFHVDLSRITLYSSSQGLVHRVRARPDIDDFYWEKAPTPILDTIESPLCLKNLSLRELKQLAAEIRLDLSSVLSCTQISPNPSMAVAELTVAMHHVFHAPVDKILWDVGNQTYAHKMLTGRRSMLRTIRQKNGLSGFTSRFESEYDSFGAGHGCNSISAGLGMAVARDIKGRRERIVAVISNWTTMSGQVYEAMGNAGYLDSNMVVILNDSRHSLLSKIEEGPKTSVNALSSTLSRLQSSKSFRRFREAAKGVTKRIGRGMHELAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLISVLQEVASLDSMGPVLIHVVTDENQVEEHNNKSNITDKQQDDNVSSVLFNNAGRPETYGDCFVESLVAEAEKDKDIVVVHAGITSEPSLELFREKFPDRIFNMGVAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKIPVRFVITSGGLVGSDGPVQCGAFDITFMSCLPNMIVMAPSDEVELVNMVATATRINDRPVCFRYPRGALVNKGHTIDDGVPIEIGKGRVLVEGKDVVLLGYGSMVHNCLNAHSLLANLGVEVTVADARFCKPLDIKLLRELCEHHSFLVTVEEGSIGGFGSHVAQFIALDGLLDQRIKWRPIVLPDSYIEHATPNQQLDKAGLTGHHIAATALSLLGRTREALSFMCF* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0635 711 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 71 355 IPR005477 GO:0008661|GO:0016114
Psa5g0635 711 SUPERFAMILY TK C-terminal domain-like 563 699 IPR009014 GO:0003824
Psa5g0635 711 Gene3D - 568 699 IPR009014 GO:0003824
Psa5g0635 711 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 70 700 IPR005477 GO:0008661|GO:0016114
Psa5g0635 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 68 451 IPR029061 -
Psa5g0635 711 Gene3D - 390 559 - -
Psa5g0635 711 SMART Transket_pyr_3 390 555 IPR005475 -
Psa5g0635 711 CDD TPP_PYR_DXS_TK_like 396 549 - -
Psa5g0635 711 Pfam Transketolase, pyrimidine binding domain 393 552 IPR005475 -
Psa5g0635 711 Gene3D - 62 359 - -
Psa5g0635 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 388 578 IPR029061 -
Psa5g0635 711 Pfam Transketolase, C-terminal domain 568 691 IPR033248 -
Psa5g0635 711 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 73 697 IPR005477 GO:0008661|GO:0016114
Psa5g0635 711 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 710 IPR005477 GO:0008661|GO:0016114
Psa5g0635 711 CDD TPP_DXS 111 355 IPR005477 GO:0008661|GO:0016114
Psa5g0635 711 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 1 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0635 Psa-Chr5 50376709 50385738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0635 428 650 Acyl Lipid Metabolism Gene Families AT3G13450 24.686 1.32e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0635 K01662 - gmx:100793268 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0635 5 50376709 50385738 Psa5g0635 5 50376709 50385738 ECH