Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0606 ATGGTGGGGATTCCAAATGACATGCTTTATACACTTGCTAATAGTGTTCAAGCTGCTGAAAAATGGGTTTCTAAGAATGTTTCTGCTCATGTTTCTTCTGGAGGTGTTGACATTAGGTATGTTGCGGTAGGGAATGAACCATTTCTGTCAACATACAATGGCACTTTTGAAGCCACTACGCTCCCAGCTCTGCAAAACATCCAGGCAGCTCTTACAAAAGCCGGTTTGAGTACTCGAGTCAAAGTTACCGTCCCATTAAACGCGGATGTGTATATAAGCTCAACAAATAACCCATCCGACGGTGATTTCAGGCCAGATATCAACAACCTCATGCTGCAGATAGTCAAGTTCTTGAGCGACAACGGAGCTCCTTTTACCGTAAACATATATCCTTTTATCAGTCTCTACTTGGATCCCAGCTTCCCTGTCGATTATGCTTTTTTCAACGGCTTTCAATCTGCTATAAATGACAATGGAAAGATCTATGACAACGTGTTTGATGCTAACCATGATACACTAGTATGGGCACTGCAGAAACACGGTTTCGGAAACTTGCCTATAATTGTCGGGGAAATTGGGTGGCCAACCGATGGAGACAGAAATGCAAATCTTCAAAGTGCTCAACGCTTTAACCAAGGTTTTATGTCGAGGTATGTTTCCGGTAAGGGGACACCGATGAGGCCTAATCCTATAGATGCCTACTTGTTTAGCTTCATAGATGAAGATAATAAGAGCATTCAGCCCGGGAACTTCGAACGCCACTGGGGGTTATTTTACTTAGACGGACAGCCCAAGTACCAACTTAATCTCGGAACAGGCCGGGCGAATGGATTGGTGGCAGCTAGCGGCGTCGAACATTTGGAGAAAAAGTGGTGTGTGTTGAAACCATCAGCAAACCTTAATAGTGATCAATTGGCACCAAGTGTGTCATATGCCTGTCAAAATGCAGATTGTACAAGTCTTGGGTATGGAACATCATGTGGTAATTTGGATGTAAAAGGAAATATCTCTTATGCATTTAACAGCTATTACCAAGTGAATGACCAAATGGATAGTGCATGCAAATTTCCTGGACTTTCCATGATCACTGATAAAGATCCTTCATTTGGAACTTGCAAATTTAGAATCATGATTCAGACAGATTCTGCTGAGCTAAATGCTATGGTTGGATCAACAACAACAGTACTCATTGCTTTGGTTGTTTTACTGTTGTGTAATGTTTCATTTTGA 1230 0.4195 MVGIPNDMLYTLANSVQAAEKWVSKNVSAHVSSGGVDIRYVAVGNEPFLSTYNGTFEATTLPALQNIQAALTKAGLSTRVKVTVPLNADVYISSTNNPSDGDFRPDINNLMLQIVKFLSDNGAPFTVNIYPFISLYLDPSFPVDYAFFNGFQSAINDNGKIYDNVFDANHDTLVWALQKHGFGNLPIIVGEIGWPTDGDRNANLQSAQRFNQGFMSRYVSGKGTPMRPNPIDAYLFSFIDEDNKSIQPGNFERHWGLFYLDGQPKYQLNLGTGRANGLVAASGVEHLEKKWCVLKPSANLNSDQLAPSVSYACQNADCTSLGYGTSCGNLDVKGNISYAFNSYYQVNDQMDSACKFPGLSMITDKDPSFGTCKFRIMIQTDSAELNAMVGSTTTVLIALVVLLLCNVSF* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0606 409 SMART X8_cls 290 374 IPR012946 -
Psa5g0606 409 SUPERFAMILY (Trans)glycosidases 1 269 IPR017853 -
Psa5g0606 409 Gene3D - 286 384 - -
Psa5g0606 409 Pfam Glycosyl hydrolases family 17 2 269 IPR000490 GO:0004553|GO:0005975
Psa5g0606 409 Gene3D Glycosidases 1 276 - -
Psa5g0606 409 ProSitePatterns Glycosyl hydrolases family 17 signature. 185 198 IPR000490 GO:0004553|GO:0005975
Psa5g0606 409 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 1 385 - -
Psa5g0606 409 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 1 385 IPR044965 GO:0004553|GO:0005975
Psa5g0606 409 Pfam X8 domain 290 360 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0606 Psa-Chr5 48282782 48286441 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0606 1 403 Glycoside Hydrolase AT4G31140 71.182 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0606 K19893 - gmx:100796552 736.487