Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0604 ATGAGTAGACCGATAACCCGGAGCAAAAATAAAAGACTAAAACATGATGATGATGGTGTTTGTGCTAGTGAAATATGGAGGAAAATTCACGAAACCGGTGAGGTTACGGAGGATGATGTTAATCAATTGTATATGATTTGGAAACCGGTTTGTTCAGGCTGCCGTGTTAATACGAAAGATAACCCGAATTGCTTTTGTGCATTGGTTCCACCTTTAAATGGAGCTAGGAAGTCTGGCTTATGGGAGAAGGTGTCGGATTTTGTTGAAAGTCTTGGCCCTGATCCAAACAAGGATCTTCGTGCTTCTGATGATTCTCCTGCAGGTTTAACGAATCTCGGGGCAACGTGTTATGCTAATGGAATACTGCAATGCTTGTATATGAATAAATTGTTTCGAGAAGGGATATTTTCTGTGGAGCCGGATGTTTTAAGGCAACAGCCAGTGTTAGATCAATTAGCTCGACTTTTTGCGCAGTTGCAAGGTAGTAAGTTGGCTTTTGTAGATTCTTCTCCTTTTGTGAAAACATTGGAGTTAGATAATGGAGTTCAGCAGGATAGCCATGAGTTCTTGACATTGCTTCTGTCGTTGCTTGAGCGTTGTCTCACTCATTCCAAAGTTCCAAAGGCAAGAACAATAGTTCAAGATCTTTTCCGCGGAAGTGTGTCTCATGTGACAACGTGCTCGCAATGTGGAAGAGACTCTGAAGCTTCTTCCAAAACGGAAGATTTCTATGAGTTGGAGTTGAATGTCAAGGGATTGAAAAGTTTAGACGAGAGCCTGGATGATTACCTAACTGTTGAAGAGCTTCATGGAGACAATCAATATTTTTGTGAGTCATGCAACACAAGAGTTGATGCTACTCGCAGCATCAAGCTTTGCACCCTACCTGATGTACTTAATTTTCAACTTAAACGTTGTGTCTTTCTTCCAAAGACTACTACAAAAAAGAAAATTACTTCTGCATTTTCATTTCCTGTGCAACTTGATATGCGGCATAGACTGTATGAGTTGTCTCAGTTTGATTTGGTATATGACTTGTCAGCTGTACTGATTCACAAGGGAACCGGTGTTAATAGTGGCCATTACATCGCTCACATCAAGGACAAAAATACGGGGCAGTGGTGGGAATTTGATGATGAACATGTTACTAATTTGGGTAACCATCCATTTGGCGAAGGATCTTCTAGTTCTACTACTAAATCCGTTGCAACTGATGCAACTCACTCAGACTGCACTGAAGCAAGGATAGCTGAAAATAATGAAAACGGTTTAAACACCGCTCATTCACAATCTTCACTTATAGAGGCATTTTCTTCTTGTGATGCTTACATGCTGATGTACCATCTTAACAATACAAAAAATATAAGTGAAAATGGGGGTATAGTTTGCGGTGCTAGCCATAGAGAAATAGAGGGTGTTGTAGCTAGTGCACGAGATGGCGTTTGTCTTCCTTCTCATCTTTTTGATGAAATTCAAAATTTAAATGCCTCATATCTCGATGCTTGTCAAAAATACAGTCATGGGAAAGAGTTAGAATTGAATCGTATTACTGAAAGGAGACAAGAAGTTCGATCTGTGTTAGCTGAAGCTCCTGTTCCACCATTAGAGCGACCATTTTATTGGATTTCTAGCGACTGGCTTCGCCAGTGGGCTGACAACATTATTCCAACTTCTATTGACAACACAGTCATCCAATGTTTACATGGGAAAGTCCCAGTTTCAAAGGTTACCTCAATAAAGCGACTATCTGCCAAAGCATGGGAAAAGTTGTTTTCCAAGTATGGTGGGATGCCAACACTGTCTCATGAAGATTATTGTCGGGATTGTCTGATACACGGGGCTCAGACAGTGGTATCAGCTGACACGTATCGGGGTAGAAGAGAATCATTGAAGTCACTTGCACGGGATGTTCTTGATGGGAACTGTCCAGATGGAAAGTATTTCATATCCAGACCATGGTTGCAGCAGTGGTGGAAAAGAAAAGTCCTTGATGCTCCATCTGAAGCTGATGCTGGACTAACAGCAGCAATTAGTTGTCCACATGGTCTATTGATGCCTGAGCAAGCTCCTGGTGCTAAACGGGTGCTTATTCCTGAGACTTTTTGGCTCTTCTTATATGAAGATGCTATTTGTGTTAAACCTGATGATGCTTTAGGTGGCCCAATTCTTCCTTCAGGTTCTATAGAGTGTTCCCAATGCATTACTGAATTATCTGAAGCAGCATGCTTGGAGGATTCTTTGAGATCAGTTAAACAAAAGCAGCGCCAGAATCATGAGAAATTATTCCATGCTAAAAGTATGCCTCTCTCTGCGGATTACAAATATTTCTTGCTGCCTTCTTCATGGATTTCAAAATGGAGAAATTACATCAGTCCATCATTCAAGAATCCAGATATACCTGAAACTTTAGACGGGTTAATTGATTCACTGATGTGTGAAAAGCACTCACAACTTGTTGAAAGACCTCCTCAACTGGTTTTCAGACGCGGTGCTATAATCCAGAGAGAATCTTCTGCAGGTGGTTTAACTATCATATCTGAGAATGATTGGATATGCTTTTGTGAAGAATGGGGTGGTACCAAGACCAAAGGTATATCTGCAACAATTGCACACATAAATGATTCAGAGAACTTTTTGACTGGGTCCAGTGACACGATGTTGATATGCGAAGATCAGTTACAGACAGGGGATAAAGTGAAAAATGAAAATGGAACTGGAAGTGAACAAATTTTGATCAAGACTTGTCCCGAGGTTTGTGAAAGTTGCATTGGAGAAAAAGAAAGCTGTGAATTAATGCATAAACTTAACTATTGCAATGAGGACATATGTGTAATTCTTGTACGCGGTAAGGAGGTACCTAAATCAATCTTGGAGGCCTCAAAAGGATTAACTGAAACAGATCGGCGGGTTTCCAAGCGCTCCCGGAAGACTAAAAATGGGAATTCAGCTAGTCTAAAAGTTTCTGCTTCAACATCACTATACCAGTTGAAGATGATGATATGGGAATCTTTTGGGGTTGTCAAGGAAAACCAGATACTACATAAAGCTGATAGGGTAATTGATATTGATGATGAGAGTGCTACCCTTGCAGATGCAAATATATTTGCCGGAGATCAAATTATAGTGAGGGATTCTGAGATACATGAGAATCGAGATATTGCTGATGAGCTCTGCAGTGATAAGATGGATCTCCAGCATACCGAGGAAGGTTTTCGCGGAACACTTCTTACAGCAAACATTTCATCCCAGGTTGTTTAA 3258 0.4067 MSRPITRSKNKRLKHDDDGVCASEIWRKIHETGEVTEDDVNQLYMIWKPVCSGCRVNTKDNPNCFCALVPPLNGARKSGLWEKVSDFVESLGPDPNKDLRASDDSPAGLTNLGATCYANGILQCLYMNKLFREGIFSVEPDVLRQQPVLDQLARLFAQLQGSKLAFVDSSPFVKTLELDNGVQQDSHEFLTLLLSLLERCLTHSKVPKARTIVQDLFRGSVSHVTTCSQCGRDSEASSKTEDFYELELNVKGLKSLDESLDDYLTVEELHGDNQYFCESCNTRVDATRSIKLCTLPDVLNFQLKRCVFLPKTTTKKKITSAFSFPVQLDMRHRLYELSQFDLVYDLSAVLIHKGTGVNSGHYIAHIKDKNTGQWWEFDDEHVTNLGNHPFGEGSSSSTTKSVATDATHSDCTEARIAENNENGLNTAHSQSSLIEAFSSCDAYMLMYHLNNTKNISENGGIVCGASHREIEGVVASARDGVCLPSHLFDEIQNLNASYLDACQKYSHGKELELNRITERRQEVRSVLAEAPVPPLERPFYWISSDWLRQWADNIIPTSIDNTVIQCLHGKVPVSKVTSIKRLSAKAWEKLFSKYGGMPTLSHEDYCRDCLIHGAQTVVSADTYRGRRESLKSLARDVLDGNCPDGKYFISRPWLQQWWKRKVLDAPSEADAGLTAAISCPHGLLMPEQAPGAKRVLIPETFWLFLYEDAICVKPDDALGGPILPSGSIECSQCITELSEAACLEDSLRSVKQKQRQNHEKLFHAKSMPLSADYKYFLLPSSWISKWRNYISPSFKNPDIPETLDGLIDSLMCEKHSQLVERPPQLVFRRGAIIQRESSAGGLTIISENDWICFCEEWGGTKTKGISATIAHINDSENFLTGSSDTMLICEDQLQTGDKVKNENGTGSEQILIKTCPEVCESCIGEKESCELMHKLNYCNEDICVILVRGKEVPKSILEASKGLTETDRRVSKRSRKTKNGNSASLKVSASTSLYQLKMMIWESFGVVKENQILHKADRVIDIDDESATLADANIFAGDQIIVRDSEIHENRDIADELCSDKMDLQHTEEGFRGTLLTANISSQVV* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0604 1085 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 107 450 IPR028889 -
Psa5g0604 1085 Gene3D Cysteine proteinases 93 449 - -
Psa5g0604 1085 Gene3D - 744 865 IPR035927 -
Psa5g0604 1085 ProSiteProfiles DUSP domain profile. 749 869 IPR006615 GO:0004843
Psa5g0604 1085 SUPERFAMILY Cysteine proteinases 105 447 IPR038765 -
Psa5g0604 1085 SUPERFAMILY DUSP-like 514 606 IPR035927 -
Psa5g0604 1085 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 1055 - -
Psa5g0604 1085 ProSiteProfiles DUSP domain profile. 621 728 IPR006615 GO:0004843
Psa5g0604 1085 Gene3D - 975 1050 - -
Psa5g0604 1085 ProSiteProfiles DUSP domain profile. 514 606 IPR006615 GO:0004843
Psa5g0604 1085 Pfam Ubiquitin carboxyl-terminal hydrolase 108 447 IPR001394 GO:0004843|GO:0016579
Psa5g0604 1085 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 2 1055 - -
Psa5g0604 1085 CDD Ubl_USP48 968 1076 IPR044743 GO:0004197|GO:0004843|GO:0016579
Psa5g0604 1085 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 344 362 IPR018200 GO:0004843|GO:0006511
Psa5g0604 1085 SUPERFAMILY Ubiquitin-like 978 1044 IPR029071 -
Psa5g0604 1085 SMART dusp 532 608 IPR006615 GO:0004843
Psa5g0604 1085 CDD Peptidase_C19L 108 447 IPR033841 GO:0004843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0604 Psa-Chr5 48052882 48061751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0604 86 385 Miscellaneous Gene Families AT4G31670 28.438 4.63e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0604 - - gmx:100782778 1830.84