Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0590 ATGACTCGCGTGTATATTGGAAATCTGGATTCACGAGTTTCTGAGAGGGATCTGGAAGATGATTTTCATGTTTTTGGAGTTATACGAAGTGTGTGGGTTGCAAGGAGGCCTCCTGGTTATGCTTTCATTGATTTTGATGACCGCAGAGACGCGCTGGATGCTATCCGCGAATTAGATGGTAAAAATGGTTGGAGGGTAGAGCTTTCTCACAACTCTAAAACTGGAGGTGGAGGAGGAGGAAGAGGTGGTGGCGGTGGTGGTCGTGGTCGGTCAGGTGGGGGTGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCCCGGGAGTGTCATTCTTCTCGTGGTGGTGGTGGTGGAAGGCGTCGGAGCCGCAGTCCACCTCGATTGCGTAGGAGCCCGAGTTATGGGCGAAGGAGTTACAGTCCTCGTGAGCGGTCCCCTAGGCGGCGAAGCCCATCTCCTCGTCGTCGCAGCCCTTCACCTCGTCGCCGAAGCTACAGCAGGTCACCCCCTCCTTACCGTGGACGTGAGGCCGTAGCACATGCTAACGGAAATGGGTTAAGGGATGCACCTCGAAGCAGAAGTTGA 597 0.536 MTRVYIGNLDSRVSERDLEDDFHVFGVIRSVWVARRPPGYAFIDFDDRRDALDAIRELDGKNGWRVELSHNSKTGGGGGGRGGGGGGRGRSGGGGSDLKCYECGEPGHFARECHSSRGGGGGRRRSRSPPRLRRSPSYGRRSYSPRERSPRRRSPSPRRRSPSPRRRSYSRSPPPYRGREAVAHANGNGLRDAPRSRS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0590 198 Pfam Zinc knuckle 99 113 IPR001878 GO:0003676|GO:0008270
Psa5g0590 198 SUPERFAMILY Retrovirus zinc finger-like domains 90 118 IPR036875 GO:0003676|GO:0008270
Psa5g0590 198 Gene3D - 1 98 IPR012677 -
Psa5g0590 198 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 190 - -
Psa5g0590 198 PANTHER BNAA04G14520D PROTEIN 2 190 - -
Psa5g0590 198 MobiDBLite consensus disorder prediction 66 93 - -
Psa5g0590 198 SMART c2hcfinal6 99 115 IPR001878 GO:0003676|GO:0008270
Psa5g0590 198 MobiDBLite consensus disorder prediction 114 198 - -
Psa5g0590 198 MobiDBLite consensus disorder prediction 152 166 - -
Psa5g0590 198 Gene3D - 99 166 - -
Psa5g0590 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Psa5g0590 198 SUPERFAMILY RNA-binding domain, RBD 2 96 IPR035979 GO:0003676
Psa5g0590 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Psa5g0590 198 ProSiteProfiles Zinc finger CCHC-type profile. 99 113 IPR001878 GO:0003676|GO:0008270
Psa5g0590 198 SMART rrm1_1 3 69 IPR000504 GO:0003723
Psa5g0590 198 CDD RRM_SRSF3_like 3 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0590 Psa-Chr5 47328403 47330164 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0590 K12896 - csin:114261802 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0590 5 47328403 47330164 Psa5g0590 5 47328403 47330164 ECH