Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0576 ATGGATCAAGTCGATTTCAACGCTCCCCATTCCATGGGAACCACCATCATCGGTGTTACCTACAACGGCGGAGTCGTTCTTGGAGCCGACTCTCGAACTAGCACTGGAGTATATGTTGCTAATCGTGCATCTGATAAAATCACACAGCTCACTGACAATGTCTACGTCTGTCGTTCTGGATCGGCTGCAGATTCTCAGGTTGTCTCTGACTATGTGCGCTACTTCCTCCATCAGCACACGATTCAGCTCGGCCAACCTGCCACAGTCAAGGTTGCTGCTAACCTTGTTCGGCTTCTCGCATATAACAACAAGAATAATTTGCAAACCGGGTTAATTGTCGGTGGCTGGGACAAGTACGAAGGTGGTCAGATCTATGGAGTTCCTCTAGGTGGAACAATTGTGCAACAACCGTTTTCTATTGGAGGATCTGGGTCCAGTTACTTGTATGGATTTTTTGATCAAGCTTGGAAAGAGGGAATGACCAAGGACGAAGCTGAGGAACTAGTGAAAAAGGCAGTTTCGCTTGCCATTGCTCGTGACGGTGCTAGTGGTGGAGTTGTCAGAACTGTCATTATTAACTCAGAGGGAGTGACTAGGAATTTCTACCCAGGTGATCAACTTCCAATATGGCACGACGAACTTGAGGCTCATGACTCCCTGCTAGACATTATTGGTGCCCCAGAGCCAATGACCATATGA 699 0.4764 MDQVDFNAPHSMGTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLAYNNKNNLQTGLIVGGWDKYEGGQIYGVPLGGTIVQQPFSIGGSGSSYLYGFFDQAWKEGMTKDEAEELVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPIWHDELEAHDSLLDIIGAPEPMTI* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0576 232 ProSiteProfiles Proteasome beta-type subunit profile. 13 192 IPR023333 -
Psa5g0576 232 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 6 227 - -
Psa5g0576 232 Pfam Proteasome subunit 12 192 IPR001353 GO:0005839|GO:0051603
Psa5g0576 232 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 14 213 IPR029055 -
Psa5g0576 232 PANTHER PROTEASOME SUBUNIT BETA 6 227 - -
Psa5g0576 232 ProSitePatterns Proteasome beta-type subunits signature. 17 64 IPR016050 GO:0005839|GO:0051603
Psa5g0576 232 CDD proteasome_beta_type_6 14 201 - -
Psa5g0576 232 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 9 214 IPR029055 -
Psa5g0576 232 PRINTS Proteasome component signature 21 36 IPR000243 GO:0004298|GO:0005839|GO:0051603
Psa5g0576 232 PRINTS Proteasome component signature 142 153 IPR000243 GO:0004298|GO:0005839|GO:0051603
Psa5g0576 232 PRINTS Proteasome component signature 153 164 IPR000243 GO:0004298|GO:0005839|GO:0051603
Psa5g0576 232 PRINTS Proteasome component signature 178 189 IPR000243 GO:0004298|GO:0005839|GO:0051603
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0576 Psa-Chr5 46719412 46724659 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0576 K02738 - gmx:100305513 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0576 5 46719412 46724659 Psa5g0576 5 46719412 46724659 ECH