Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0534 ATGACAAGTTTGGAGTTAAAGTTACTCAACATTGATTTGGATTTATATGTGAATGGCATGGCATCTATTAGAAAAACATTGTCTCCGGTTTCTCGGGCCAGAAGTGTAACAAATCTAGAAGTCTGTTCAGTATCTTCCCCTTTGTCTAAATCCTCATCAAGTCCTCAGAATTCTCTGCTATCGGAAGGACTGTTACCTTCTTCGGTCACCTCGTTGGACTCGCGTGCTCTTTTGCTTGGTGTTTTCTCACCAAGATCTTTGAGGATTATTGAGAGATCAAATTCAAAGCACAAGGGACAGGTTTGGAGGAAAGTGCTTTTCCATTTTTTCATTTGTTTCATGGTTGGTGTTTCTATTGGACTCATCCCGCTCGCATCGACCAACTTGTCCTTGAATCTCATGGCAAACCATCAAGGTTTCTCTTTTGAGGTGATATCCGAAGTCGAAAATTTGAAGATAAATAAGACACAATTAGTTGATGAGGATGTGAAGTTTGATGCTACTTTGATTTCACCATTGCAAGAACAAGAACTGACAAATGGTGTAGCATATAATATCTCAGATAGCGAGTTCACTGACGAAACATATTTGGAGTCTCGAACGCTTCTCATTGTTATCACGCCGACTTTCAATCGTCCATTTCAAGCTTATTACTTGCATCGTTTGTCACAAACTTTGAAATTGGTTCAACCTCCTTTGTTGTGGATTGTTGTTGAGATGAATTCTCAATCTGAAGAAACTTCTGATATCTTGAGGAGTAGCGGGATCATGTATAGGCATCTTGTCTGCAAAATGAATGTAACCAACACAAACCATAAAAGCATTCTTATGAGAAATGTCGCGATAGCTCACGTTGAAACTCACCGTCTCGATGGAATTGTCTATTTTGCAGACGATGATAACGTCTACTCAATTGAACTCTTTCAGCAAATGAGAGAAATAAGGCGATTTGGAACATGGACTGTTGCAAAACTATCAGAGGATAGAAGTGGCATTGTCTTTCAAGGGCCAATTTGTAATGGAAGTGAAGTGATTGGGTGGCACACAGATAATGAATCAGATAGGAAATCTAAAAGATTTCATGCTGAAATATCCGGTTTTGCCTTCAACAGTACGATACTATGGGAACGAAAACCGCTTCTTGAACGTATCAGGAAGTTCGAATCAGCCAAGGAGAATCTGTGGGTTAGCATGTTGATTGAGCAGGTTGTTGAAGATGAAAGTCAAATGGAAGGCCTAATGAGCGACTGCTCGAGAGTTATGGTTTGGCGTATCGATCACAAGTCATCTCATTCCTTCTATCCTCGCAAATGGATTGCAGAAAACAACCTAGATGTCATTTGGAATCTTCCACTTGTGTGA 1362 0.4001 MTSLELKLLNIDLDLYVNGMASIRKTLSPVSRARSVTNLEVCSVSSPLSKSSSSPQNSLLSEGLLPSSVTSLDSRALLLGVFSPRSLRIIERSNSKHKGQVWRKVLFHFFICFMVGVSIGLIPLASTNLSLNLMANHQGFSFEVISEVENLKINKTQLVDEDVKFDATLISPLQEQELTNGVAYNISDSEFTDETYLESRTLLIVITPTFNRPFQAYYLHRLSQTLKLVQPPLLWIVVEMNSQSEETSDILRSSGIMYRHLVCKMNVTNTNHKSILMRNVAIAHVETHRLDGIVYFADDDNVYSIELFQQMREIRRFGTWTVAKLSEDRSGIVFQGPICNGSEVIGWHTDNESDRKSKRFHAEISGFAFNSTILWERKPLLERIRKFESAKENLWVSMLIEQVVEDESQMEGLMSDCSRVMVWRIDHKSSHSFYPRKWIAENNLDVIWNLPLV* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0534 453 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 201 443 IPR029044 -
Psa5g0534 453 CDD GlcAT-I 202 424 IPR005027 GO:0015018|GO:0016020
Psa5g0534 453 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9L-RELATED 20 447 - -
Psa5g0534 453 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 20 447 IPR005027 GO:0015018|GO:0016020
Psa5g0534 453 SUPERFAMILY Nucleotide-diphospho-sugar transferases 202 443 IPR029044 -
Psa5g0534 453 Pfam Glycosyltransferase family 43 222 426 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0534 Psa-Chr5 42981460 42984396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0534 20 447 Glycosyltransferase AT1G27600 40.826 4.50e-106 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0534 K20869 - gmx:100808765 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0534 5 42981460 42984396 Psa5g0534 5 42981460 42984396 ECH