Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0532 ATGGTGAATCCGTTGGTTGATCGTGCTACGAGCGACATGCTCATCGGTCCTGATTGGGCTTTGAACATCGAGATCTGTGATATACTCAATCGTGAACCAGGGCAATCAAAGGATGTTGTTAAAGGTTTAAAGAGGCGGATTGGAAGTAGAAATTCTAAAGTTCAACTTCTTGCACTAACTCTGCTGGAGACGATCATAAAAAATTGTGGGGACATTGTCCACATGCATGTTGCGGAGAGAGACGTTCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCCGATGCCCATGTTAGAGAGAAGATATTGACTCTTATCGATACTTGGCAAGAAGCTTTTGGAGGCCCAAGGGCAAGATATACACAGTATTATGCTGCCTACCAGGACCTGTTGCATGCGGGGGCTGTATTCCCTCCAAGGTCTGAGCAATCTGCACCCATATTCACGCCACTACAATCACAACCATTGGGATCATACCCTCAAAACATACGTGACTCTGATACTCGGCAACCCACAGCCGAGTCCTCGGCGGAGTCTGAGTTTCCGACTCTTAGTTTGACTGAAATTCAGAATGCACGTGGTATTATGGACGTTCTTACAGAAATGCTCAGTGCTTTAGAGCCTGGTAACAAAGAAGGGCTTCGGCAGGAAGTTATTGTTGATTTGGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTACACCTTGTTAATTCAACTTCGGATGAGTCACTACTGTGCCAAGGACTAGCTCTTAATGATGAACTGCAGCGTATACTTGCCAAGCATGAATCCATAGCTTCAGCAGGACCTACTGTCAAAAATCAAACAGAGAAATCAAATTCAGCACCTACTGGAGCACGTGTAGATGCTGATGGTCCTTTGATTGATACTGGAGATACTAGTATACAAACTGATGCAAGATCTTCTAGTGCTGAAGCAGGGTCTCAAACATTGAATCAGTTGTTGCTTCCTGCACCCCCCACATCAAATGGTTCAGCTCCTCCAGTAAAGGTTGATCCCAAATGGGATCTGCTCAGTGGCGAAGAGTTTAACTCACCCAAAGAAGATAATTCACTTGCTCTTGTTCCTGTAGGAGAACAACAGGCAGCCAGTCCCACCTCTCAACAAAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAACAATGTGCCACTTTCTGTTAATACCCAACCAACAGCCCCTCAATTTCAACAACAAACTATCATATCTCAAGGTGTATTTTACCCCAACGGAAGCATGCCAAATGCAGGGTCACCTCGGTACGAGCAGTCACTATATACTCAAAGTACAGGTCCTGCCTGGAATGGTCAAGTTGCGCAGCAGCAGCAGCCACCATCACCCGTTTATGGTGCACAAAGTGGTGGATCATTCCCACCTCCTCCTTGGGAAACTCAACCTGCAGACAACGGTAGTCCAGTAGCAGGCAGTCAATACCCGCAGCCACTGCAAGTCACTCAAATGGTCATGACACATGTACAAACTGGCGGACTTCCTCAGGGACCTCAAGCAACGGGATATGATCAGGCTCCTGGAATGTTTATACAGCCAAATGCTAACCCTATCTCTACATTCAATAACCAAGTTCAAAATAACCAAATGGGATTGCAGCCTCCCTATATTCAGGGGGTTGCAGGTCCTTATATGGGCATGGTTCCACCTCAAATGCAAAATGGTCCTGTGGCTTCCATGTTTCCTCAACAGATGTTTGGTAACCAATTCCCAGGATATGGCTATGGTCAGCAACAAGGGCTTCAATATGCTGAGCAGCAAATGTATGGTTTATCTTTGAAAGATGATAATGCTCTAAGAAATCCTTACCAGGTTTCTGCTGCATCTTATGCCCCATCCGGAAAGCCTTCCAAGCCAGAGGATAAGTTATTTGGAGACCTTGTTGACATGGCAAAAGTGAAACCAAAATCTACTACAGACCCGAGCTGA 1965 0.4534 MVNPLVDRATSDMLIGPDWALNIEICDILNREPGQSKDVVKGLKRRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAERDVLHEMVKIVKKKPDAHVREKILTLIDTWQEAFGGPRARYTQYYAAYQDLLHAGAVFPPRSEQSAPIFTPLQSQPLGSYPQNIRDSDTRQPTAESSAESEFPTLSLTEIQNARGIMDVLTEMLSALEPGNKEGLRQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDELQRILAKHESIASAGPTVKNQTEKSNSAPTGARVDADGPLIDTGDTSIQTDARSSSAEAGSQTLNQLLLPAPPTSNGSAPPVKVDPKWDLLSGEEFNSPKEDNSLALVPVGEQQAASPTSQQNALVLFDMFSNGNNVPLSVNTQPTAPQFQQQTIISQGVFYPNGSMPNAGSPRYEQSLYTQSTGPAWNGQVAQQQQPPSPVYGAQSGGSFPPPPWETQPADNGSPVAGSQYPQPLQVTQMVMTHVQTGGLPQGPQATGYDQAPGMFIQPNANPISTFNNQVQNNQMGLQPPYIQGVAGPYMGMVPPQMQNGPVASMFPQQMFGNQFPGYGYGQQQGLQYAEQQMYGLSLKDDNALRNPYQVSAASYAPSGKPSKPEDKLFGDLVDMAKVKPKSTTDPS* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0532 654 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Psa5g0532 654 PANTHER TOM1-LIKE PROTEIN 1 650 IPR044836 GO:0035091|GO:0043130|GO:0043328
Psa5g0532 654 MobiDBLite consensus disorder prediction 270 284 - -
Psa5g0532 654 Pfam GAT domain 194 266 IPR004152 GO:0035091|GO:0043130
Psa5g0532 654 CDD GAT_GGA_like_plant 188 266 - -
Psa5g0532 654 Gene3D - 183 274 IPR038425 -
Psa5g0532 654 SUPERFAMILY GAT-like domain 142 267 - -
Psa5g0532 654 Gene3D - 1 148 IPR008942 -
Psa5g0532 654 CDD VHS 2 130 - -
Psa5g0532 654 Pfam VHS domain 4 130 IPR002014 GO:0035091|GO:0043130
Psa5g0532 654 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Psa5g0532 654 MobiDBLite consensus disorder prediction 270 295 - -
Psa5g0532 654 PANTHER TARGET OF MYB PROTEIN 1 1 650 - -
Psa5g0532 654 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Psa5g0532 654 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0532 Psa-Chr5 41766857 41774242 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0532 - - gmx:100805762 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0532 5 41766857 41774242 Psa5g0532 5 41766857 41774242 ECH