Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0520 ATGCATGCTGTCATTACCACCATGGATTTTTATGGAAACAGAACACTCCTTGCCTTAATGGACAAAGAAAAACCAGAACAACCAGAATCTCCCAACATTCACCTTCATCTCCAAATCCAAACTCACCGCGAAATGAATGAGCAAGACATTCAGTTTAGTCCACTAAGATCTTCTGTTTTTCCACAATCTCCATGGACACTTTCTCATCTTCCATCTCCCTCCCCTTCATTGCTCTACCATTGCATCGCCTCCCTCCACCGCCACGAAGGAAACATCTACTCCATCTCAGCTTCCAAAGGCTTCATCTTTACGGGATCCAACAGTAGTCGAATTCGTGTTTGGAAGCAGCCAGATTGCATGGACAAAGGCTATCTGAAATCAAACTCCGGCGACGTTCGTGCCGTTTTAGCGTATAACAACATGGTTTTCACCACACACAAAGATCACAAAATCAGAATATGGAACTTCAGTGTTTCAGAGAATTTCAAATCCAAGAAAGTAGCTACTCTTCCCAAAAGAAAAAACAACTCTCTTATAAACTTCAACCGAACAAAACACAACAACTCAAACAATTACAAACACAAAGAAACCATTTCTTGCATGGCTTATTACCATTCAGAAGGGTTATTATACACAGGCTCTCATGACAGAACAGTGAAAACATGGAGAATCTCTGATGGAAAATGCTTAGACTCATTTCTAGCACATGAAGATCATGTAAATTCTGTGTTGGTTAACCAAGACGATGGTTGTGTTTTCACATGTTCTTCTGATGGATCAGTGAAAATATGGAGAAGGGTATACACAGAAAACTCACACACATTAACAATGACACTAAAGTTTCAACCTTCACCGGTGAACACACTAGCATTGAGTTCATCATTCAACCATTGTTTTCTCTACTCCGGAACTTCAGATGGAATGATAAATTTCTGGGAGAAGGAAAGGCTGTGTTACAGGTTCAACCATGGAGGGTTTCTGCAGGGTCATCGATTCGCGGTACTTTGCGTTGTGACAGTAGGGAACAACATGGTATTCAGTGGCTCGGAGGATACGACGATACGAGTTTGGAGAAGAGAGGAAGGGAGTTGTTATCATGAATGTTTGGCTGTTTTGGATGGACATAGAGGACCTGTGAGGTGTTTGGCTGCTTGTCTTGAGATGGAAAAGGTTGTTGTTGGGTTTTTGGTTTATAGTGGGAGTTTGGACCAGACATTTAAGGTTTGGAGGATTAAGGTTTTTTGTGAGGATGAGAATATTGTTGGTGAAAAGTGTGAAGAGAGAGTGAAGAAGGTTAGGGAGTATGATATGAGTCCTGTTTTGTCACCTTCTTGGGTTGAGAAGAAACTTCAGGGTAGTAGTCCTTTTCAGTAA 1374 0.4134 MHAVITTMDFYGNRTLLALMDKEKPEQPESPNIHLHLQIQTHREMNEQDIQFSPLRSSVFPQSPWTLSHLPSPSPSLLYHCIASLHRHEGNIYSISASKGFIFTGSNSSRIRVWKQPDCMDKGYLKSNSGDVRAVLAYNNMVFTTHKDHKIRIWNFSVSENFKSKKVATLPKRKNNSLINFNRTKHNNSNNYKHKETISCMAYYHSEGLLYTGSHDRTVKTWRISDGKCLDSFLAHEDHVNSVLVNQDDGCVFTCSSDGSVKIWRRVYTENSHTLTMTLKFQPSPVNTLALSSSFNHCFLYSGTSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCVVTVGNNMVFSGSEDTTIRVWRREEGSCYHECLAVLDGHRGPVRCLAACLEMEKVVVGFLVYSGSLDQTFKVWRIKVFCEDENIVGEKCEERVKKVREYDMSPVLSPSWVEKKLQGSSPFQ* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0520 457 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 449 IPR045182 -
Psa5g0520 457 Pfam WD domain, G-beta repeat 367 409 IPR001680 GO:0005515
Psa5g0520 457 Pfam WD domain, G-beta repeat 194 222 IPR001680 GO:0005515
Psa5g0520 457 Pfam WD domain, G-beta repeat 277 312 IPR001680 GO:0005515
Psa5g0520 457 Pfam WD domain, G-beta repeat 326 357 IPR001680 GO:0005515
Psa5g0520 457 Pfam WD domain, G-beta repeat 227 264 IPR001680 GO:0005515
Psa5g0520 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 233 264 IPR001680 GO:0005515
Psa5g0520 457 SMART WD40_4 185 223 IPR001680 GO:0005515
Psa5g0520 457 SMART WD40_4 118 155 IPR001680 GO:0005515
Psa5g0520 457 SMART WD40_4 320 358 IPR001680 GO:0005515
Psa5g0520 457 SMART WD40_4 365 410 IPR001680 GO:0005515
Psa5g0520 457 SMART WD40_4 272 313 IPR001680 GO:0005515
Psa5g0520 457 SMART WD40_4 226 265 IPR001680 GO:0005515
Psa5g0520 457 SMART WD40_4 78 115 IPR001680 GO:0005515
Psa5g0520 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 232 IPR001680 GO:0005515
Psa5g0520 457 SUPERFAMILY WD40 repeat-like 80 409 IPR036322 GO:0005515
Psa5g0520 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 233 264 - -
Psa5g0520 457 Gene3D - 47 178 IPR015943 GO:0005515
Psa5g0520 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 367 IPR001680 GO:0005515
Psa5g0520 457 PANTHER OS01G0232200 PROTEIN 8 449 - -
Psa5g0520 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 228 - -
Psa5g0520 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 85 115 IPR001680 GO:0005515
Psa5g0520 457 CDD WD40 81 410 - -
Psa5g0520 457 Gene3D - 268 413 IPR015943 GO:0005515
Psa5g0520 457 Gene3D - 179 267 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0520 Psa-Chr5 41259106 41260894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g0520 194 414 Miscellaneous Gene Families AT5G08390 24.348 3.64e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0520 - - mtr:MTR_3g110185 798.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0520 5 41259106 41260894 Psa5g0520 5 41259106 41260894 ECH