Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0516 ATGGCCACTTCTTATAATAATAATCCATTAAAAGTAAATTGCTCCAATAACAAAGGACCCTTCCATGTCTCAGACAATTCTCGTCAACACAACAACATTCCACTTTTGTCTATTTTTAAGCAGCCAAACTTGAGATCAACTATACCGCAAGTGTCTTTGCAATTTGATGTTGCCAAAACAGTGAAAAATAATATAGCAAAATTAGTTGATGTTTTTGTGGATTCGTTCTTTGAGTTCAGTGACAAGCCATTGCTTCCATCTATGAGTAACTTTGCTCCTGTGGAAGAGTTGAGAGAAGCCATAGTTGTGAGTAGCATCCAAGGACAAATTCCAAAGGATTTTCCAGAGGGTGTATACATTAGAAATGGATCAAATCCACTTTTTGGAGGACTAAAATCAACAAACTCAATCTTTGGTAAGTCAAGTCACGTCTGGGTGGAAGGAGAAGGAATGCTTCATGCATTGTATTTTCAAAAATCAAGTCATGGAACCTGGAATGTCATCTACAACAACAAACACGTCGAAACCGAAACCTACAATCTTGAAAAACAAAGAAACAAACCATTGTTTCTCCCCGCCGCACAAGGCCATTCACTCGCCATTTTATCTGCTTATCTATTCAACTGGCTGAGATACGGCACAGTAAACAAATACTTCAGCAACACCAGTGTGTTTGAGCATTCAGGAAAGTTTTACTCAGTTGCTGAAAGTCACATGCCACAAGAGATTGATATATTATCCTTGAAAACTTTAAACAATTGGGAACTCAGCGCAACTTGGAATCGATCTTTTCCGAGTCATCCAAAGAAAGCTCCAATTACTGGAGAGCTAGTAGCATTAGGTGTGGAACCAATTAAACCTTTCGCCGTGGTTGGAGTTATTTCAGCGGATGGAAAGAAGTTTGTTCATAAAGTTGATATCAAACTAAACAGATGCAGTCTTTGCCATGACATAGGTGTTACACAAAGGTACAATGTGATCATGGATTTTCCACTCACCATTGATCTTATCAGACTTCTAAGAGGAGAGCAGTTAATAAAGTATGATAAGAAAGATTATGCAAGGATTGGAATAATGCCGCGCTATGGTGACGCAGACTCAATCAAATGGTTTGAGGTTGAACCTAATTGCACCTTTCACGTTATCAATTCTTTTGAAAATGGTGATGAGGTTGTAGTGAGGGGATGCAGATCTCTTGATTCTTTAATTCCTAAACCCGACTCGAGTTCAAACAACTATGAGTCGTTATCTCGTTGTTACGAATGGCGATTGAATATGAAAACCGGAGAGGTTAAGGAGAAATATCTGTGTGGTGAGAAAGCAGTTTACATGGATTTTCCTATGATCAATGAAAACTATGTTGGTATTAAGCATAAATATGCTTACACACAAGTAGTTGATCCTATTGCAAGCTCCACCGCTGAATATGTGCCAAAGTATGGAGGTTTAGCAAAGCTATACTTGGAAGAATCATGTGAAGAGTCTTGTATGTCAATGGTGAAAGAGGAAGGTATAAAGATGGAATACCATATGTTTGAGAAGAATACATATTGCAATGGAGCAGCGTTTGTGGCTAGAGATGGAGGAGTTGAAGAAGATGATGGTTGGATCATTACTTTTGTTCACAATGAAGTTACTAACAAATCTCAAGCTCATATAATAGATACAAAGAATTTCTCTGGTGAGACGGTTGCGAAAATTGAAATGCCTTATAGAGTTCCATATGGATTTCATGGAGCTTTCATGCCAATCTCATTCCAAGATCACTAG 1770 0.3819 MATSYNNNPLKVNCSNNKGPFHVSDNSRQHNNIPLLSIFKQPNLRSTIPQVSLQFDVAKTVKNNIAKLVDVFVDSFFEFSDKPLLPSMSNFAPVEELREAIVVSSIQGQIPKDFPEGVYIRNGSNPLFGGLKSTNSIFGKSSHVWVEGEGMLHALYFQKSSHGTWNVIYNNKHVETETYNLEKQRNKPLFLPAAQGHSLAILSAYLFNWLRYGTVNKYFSNTSVFEHSGKFYSVAESHMPQEIDILSLKTLNNWELSATWNRSFPSHPKKAPITGELVALGVEPIKPFAVVGVISADGKKFVHKVDIKLNRCSLCHDIGVTQRYNVIMDFPLTIDLIRLLRGEQLIKYDKKDYARIGIMPRYGDADSIKWFEVEPNCTFHVINSFENGDEVVVRGCRSLDSLIPKPDSSSNNYESLSRCYEWRLNMKTGEVKEKYLCGEKAVYMDFPMINENYVGIKHKYAYTQVVDPIASSTAEYVPKYGGLAKLYLEESCEESCMSMVKEEGIKMEYHMFEKNTYCNGAAFVARDGGVEEDDGWIITFVHNEVTNKSQAHIIDTKNFSGETVAKIEMPYRVPYGFHGAFMPISFQDH* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0516 589 Pfam Retinal pigment epithelial membrane protein 92 583 IPR004294 GO:0016702
Psa5g0516 589 PANTHER BETA-CAROTENE DIOXYGENASE 37 584 IPR004294 GO:0016702
Psa5g0516 589 PANTHER OS06G0162550 PROTEIN 37 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0516 Psa-Chr5 41184109 41187684 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0516 - - gmx:100817738 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0516 5 41184109 41187684 Psa5g0516 5 41184109 41187684 ECH