Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g0497 ATGGATGGTCAACTTGGTATCAGTGAAGAGGACTCGCATGATTCCCTGGCTCCTTGCTTACTTAGCAAGTTTCTTGAGTTGCAACCACCTGATTCTTCAACCGGTCTATCTGAAGCAGAAGACAGAGCATCACTAAAGATGTGTACTGTCAAAGCAGGAGGAATGATGTCTCTGGCTATTGATAACCGTGGGACCCTGTGGATATGGGGAAACATCCCAGAAGAAAACAAAGAAGGTGGTTTATCTCTTGTAAGCAGTTTCATTCCAAGACCAGTCTGGGATTTTCATGGTCGAGCTGTTGTCAAGGTTTCATGTGGAAACGAGCATGTTGTAGCGCTGGTTAGTGCTACAGAATCACACAAGGGTGAAGATCTACTTTGCTACTCTTGGGGTTATAACAGCCATGGCCAATTAGGTTTGGGGGATAGACAGAGCAGGCTGCGTCCCGAAGTTGTAAAAATACTCGACGAGGATTCTCCTTTGACAATTTACGAGGTAGCATGTGGTGCCTTTCACACGGCTTTGCTAACTCACAAAAAGGAACGTGGTGACACATTAGAAAGCATGTGCTGGACCTTTGGCCTTGGCGAAAACGGTCAACTTGGGCATGGAACGACGCAAAGCGCTTTATTTCCTACACCCGTTAAAGTGTTGCCCCAAAATGCATACTTTATTTCTGTTGACTGTGGCTTGTTTCATACAAGTGTTGTTTCCTCGACTGGGGGTGTATGGTCCTGGGGAATGGAGAAGGGTCTTGGCTTATGTCCTGACGCCAGTCGTGGTGAAACAGTTTCCGGTGACGCCCTCTCCCCCCTTCTCATCTCATGCACGCCGCATCAATCTATTTTTCCAGATCCAGTTAAAGTTGTGTGTGGGGCTGCACACACTGTTGTTATCGTGCAGAAGGGATATAAGGTGTGGTCTTGGGGCAGAGGAAGGAGTGGTGTTCTTGGGAATGGTAAGGAAATTGATAGTTACACTCCCACCATTGTTTTGTGGCCTCCAATGACCGAGGATTTCAAAGAAGAGGATTCGAAGAGCTCGGATGAGCAAGATAACGCCGCAGAAAAGAAACTCGAAGTAATAACAGAAACAGACGAGAAATTATCATCAGCATTGAATGAGGTGAAGCTGCTTCAAACAAAGCTATCTACAATGGAAAAATATGCTAGTATACTTCATGGTTCGATTTTTGGAAAACCTTTTGATGAACACGATATTCCAGTTTCGATGCGGGATTCAGGTTCAATGAATATTGCAAAAGAATGGGATGACATGTTAGAGGCAGCAGATGATAGGAAGCTAGTTAGGATGGAAATGTTTTACCGCGAAATGCTAGCCGGCGTGAAAGATAAATTAATGAAGAGAAAGATCAAGGAAATTATAAAGGAGTGTCTCCAATCTTCAAGGTAA 1413 0.4466 MDGQLGISEEDSHDSLAPCLLSKFLELQPPDSSTGLSEAEDRASLKMCTVKAGGMMSLAIDNRGTLWIWGNIPEENKEGGLSLVSSFIPRPVWDFHGRAVVKVSCGNEHVVALVSATESHKGEDLLCYSWGYNSHGQLGLGDRQSRLRPEVVKILDEDSPLTIYEVACGAFHTALLTHKKERGDTLESMCWTFGLGENGQLGHGTTQSALFPTPVKVLPQNAYFISVDCGLFHTSVVSSTGGVWSWGMEKGLGLCPDASRGETVSGDALSPLLISCTPHQSIFPDPVKVVCGAAHTVVIVQKGYKVWSWGRGRSGVLGNGKEIDSYTPTIVLWPPMTEDFKEEDSKSSDEQDNAAEKKLEVITETDEKLSSALNEVKLLQTKLSTMEKYASILHGSIFGKPFDEHDIPVSMRDSGSMNIAKEWDDMLEAADDRKLVRMEMFYREMLAGVKDKLMKRKIKEIIKECLQSSR* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g0497 470 SUPERFAMILY RCC1/BLIP-II 3 335 IPR009091 -
Psa5g0497 470 Gene3D - 1 361 IPR009091 -
Psa5g0497 470 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 188 240 IPR000408 -
Psa5g0497 470 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 7 469 - -
Psa5g0497 470 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 241 302 IPR000408 -
Psa5g0497 470 PRINTS Chromosome condensation regulator RCC1 signature 126 142 IPR000408 -
Psa5g0497 470 PRINTS Chromosome condensation regulator RCC1 signature 163 176 IPR000408 -
Psa5g0497 470 PRINTS Chromosome condensation regulator RCC1 signature 306 320 IPR000408 -
Psa5g0497 470 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 125 179 IPR000408 -
Psa5g0497 470 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 7 469 - -
Psa5g0497 470 Coils Coil 362 382 - -
Psa5g0497 470 Pfam Regulator of chromosome condensation (RCC1) repeat 127 176 IPR000408 -
Psa5g0497 470 Pfam Regulator of chromosome condensation (RCC1) repeat 241 299 IPR000408 -
Psa5g0497 470 Pfam Regulator of chromosome condensation (RCC1) repeat 191 236 IPR000408 -
Psa5g0497 470 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 166 176 IPR000408 -
Psa5g0497 470 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 64 116 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g0497 Psa-Chr5 39506592 39509109 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g0497 - - gmx:100815199 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g0497 5 39506592 39509109 Psa5g0497 5 39506592 39509109 ECH